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Lindsten, Fredrik
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Calafat, F. M., Wahl, T., Lindsten, F., Williams, J. & Frajka-Williams, E. (2018). Coherent modulation of the sea-level annual cycle in the United States by Atlantic Rossby waves. Nature Communications, 9, Article ID 2571.
Öppna denna publikation i ny flik eller fönster >>Coherent modulation of the sea-level annual cycle in the United States by Atlantic Rossby waves
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2018 (Engelska)Ingår i: Nature Communications, ISSN 2041-1723, E-ISSN 2041-1723, Vol. 9, artikel-id 2571Artikel i tidskrift (Refereegranskat) Published
Abstract [en]

Changes in the sea-level annual cycle (SLAC) can have profound impacts on coastal areas, including increased flooding risk and ecosystem alteration, yet little is known about the magnitude and drivers of such changes. Here we show, using novel Bayesian methods, that there are significant decadal fluctuations in the amplitude of the SLAC along the United States Gulf and Southeast coasts, including an extreme event in 2008-2009 that is likely (probability = 68%) unprecedented in the tide-gauge record. Such fluctuations are coherent along the coast but decoupled from deep-ocean changes. Through the use of numerical and analytical ocean models, we show that the primary driver of these fluctuations involves incident Rossby waves that generate fast western-boundary waves. These Rossby waves project onto the basin-wide upper mid-ocean transport (top 1000 m) leading to a link with the SLAC, wherein larger SLAC amplitudes coincide with enhanced transport variability.

Ort, förlag, år, upplaga, sidor
Nature Publishing Group, 2018
Nationell ämneskategori
Oceanografi, hydrologi och vattenresurser
Identifikatorer
urn:nbn:se:liu:diva-159804 (URN)10.1038/s41467-018-04898-y (DOI)000437101700001 ()29968703 (PubMedID)
Forskningsfinansiär
Vetenskapsrådet, 2016-04278Stiftelsen för strategisk forskning (SSF), ICA16-0015
Anmärkning

Correction in: Nature Communications, vol. 9, Article number: 4312, 2018.

DOI: 10.1038/s41467-018-06852-4

Tillgänglig från: 2019-08-22 Skapad: 2019-08-22 Senast uppdaterad: 2019-08-23
Wigren, A., Murray, L. & Lindsten, F. (2018). Improving the particle filter in high dimensions using conjugate artificial process noise. In: 18th IFAC Symposium on System IdentificationSYSID 2018 Proceedings: . Paper presented at SYSID 2018, July 9–11, Stockholm, Sweden (pp. 670-675). Elsevier, 51
Öppna denna publikation i ny flik eller fönster >>Improving the particle filter in high dimensions using conjugate artificial process noise
2018 (Engelska)Ingår i: 18th IFAC Symposium on System IdentificationSYSID 2018 Proceedings, Elsevier, 2018, Vol. 51, s. 670-675Konferensbidrag, Publicerat paper (Refereegranskat)
Abstract [en]

The particle filter is one of the most successful methods for state inference and identification of general non-linear and non-Gaussian models. However, standard particle filters suffer from degeneracy of the particle weights, in particular for high-dimensional problems. We propose a method for improving the performance of the particle filter for certain challenging state space models, with implications for high-dimensional inference. First we approximate the model by adding artificial process noise in an additional state update, then we design a proposal that combines the standard and the locally optimal proposal. This results in a bias-variance trade-off, where adding more noise reduces the variance of the estimate but increases the model bias. The performance of the proposed method is empirically evaluated on a linear-Gaussian state space model and on the non-linear Lorenz'96 model. For both models we observe a significant improvement in performance over the standard particle filter.

Ort, förlag, år, upplaga, sidor
Elsevier, 2018
Serie
IFAC-PapersOnLine, ISSN 2405-8963 ; 51:15
Nyckelord
Data assimilation, Sequential Monte Carlo, Estimation, filtering, State-space models, Nonlinear system identification
Nationell ämneskategori
Reglerteknik Signalbehandling
Identifikatorer
urn:nbn:se:liu:diva-159806 (URN)10.1016/j.ifacol.2018.09.207 (DOI)000446599200114 ()
Konferens
SYSID 2018, July 9–11, Stockholm, Sweden
Forskningsfinansiär
Stiftelsen för strategisk forskning (SSF), RIT15-0012Vetenskapsrådet, 2016-04278Stiftelsen för strategisk forskning (SSF), ICA16-0015
Tillgänglig från: 2019-08-22 Skapad: 2019-08-22 Senast uppdaterad: 2019-08-23
Svensson, A., Lindsten, F. & Schön, T. B. (2018). Learning nonlinear state-space models using smooth particle-filter-based likelihood approximations. In: 18th IFAC Symposium on System IdentificationSYSID 2018 Proceedings: . Paper presented at SYSID 2018, July 9–11, Stockholm, Sweden (pp. 652-657). Elsevier
Öppna denna publikation i ny flik eller fönster >>Learning nonlinear state-space models using smooth particle-filter-based likelihood approximations
2018 (Engelska)Ingår i: 18th IFAC Symposium on System IdentificationSYSID 2018 Proceedings, Elsevier, 2018, s. 652-657Konferensbidrag, Publicerat paper (Refereegranskat)
Abstract [en]

When classical particle filtering algorithms are used for maximum likelihood parameter estimation in nonlinear state-space models, a key challenge is that estimates of the likelihood function and its derivatives are inherently noisy. The key idea in this paper is to run a particle filter based on a current parameter estimate, but then use the output from this particle filter to re-evaluate the likelihood function approximation also for other parameter values. This results in a (local) deterministic approximation of the likelihood and any standard optimization routine can be applied to find the maximum of this approximation. By iterating this procedure we eventually arrive at a final parameter estimate.

Ort, förlag, år, upplaga, sidor
Elsevier, 2018
Serie
IFAC-PapersOnLine, ISSN 2405-8963 ; 51:15
Nationell ämneskategori
Signalbehandling Reglerteknik
Identifikatorer
urn:nbn:se:liu:diva-159807 (URN)10.1016/j.ifacol.2018.09.216 (DOI)000446599200111 ()
Konferens
SYSID 2018, July 9–11, Stockholm, Sweden
Forskningsfinansiär
Stiftelsen för strategisk forskning (SSF), RT15-0012, ICA16-0015Vetenskapsrådet, 621-2016-06079, 2016-04278
Tillgänglig från: 2018-10-08 Skapad: 2019-08-22 Senast uppdaterad: 2019-08-23
Svensson, A., Schön, T. B. & Lindsten, F. (2018). Learning of state-space models with highly informative observations: A tempered sequential Monte Carlo solution. Mechanical systems and signal processing, 104, 915-928
Öppna denna publikation i ny flik eller fönster >>Learning of state-space models with highly informative observations: A tempered sequential Monte Carlo solution
2018 (Engelska)Ingår i: Mechanical systems and signal processing, ISSN 0888-3270, E-ISSN 1096-1216, Vol. 104, s. 915-928Artikel i tidskrift (Refereegranskat) Published
Abstract [en]

Probabilistic (or Bayesian) modeling and learning offers interesting possibilities for systematic representation of uncertainty using probability theory. However, probabilistic learning often leads to computationally challenging problems. Some problems of this type that were previously intractable can now be solved on standard personal computers thanks to recent advances in Monte Carlo methods. In particular, for learning of unknown parameters in nonlinear state-space models, methods based on the particle filter (a Monte Carlo method) have proven very useful. A notoriously challenging problem, however, still occurs when the observations in the state-space model are highly informative, i.e. when there is very little or no measurement noise present, relative to the amount of process noise. The particle filter will then struggle in estimating one of the basic components for probabilistic learning, namely the likelihood p(datalparameters). To this end we suggest an algorithm which initially assumes that there is substantial amount of artificial measurement noise present. The variance of this noise is sequentially decreased in an adaptive fashion such that we, in the end, recover the original problem or possibly a very close approximation of it. The main component in our algorithm is a sequential Monte Carlo (SMC) sampler, which gives our proposed method a clear resemblance to the SMC2 method. Another natural link is also made to the ideas underlying the approximate Bayesian computation (ABC). We illustrate it with numerical examples, and in particular show promising results for a challenging Wiener-Hammerstein benchmark problem.

Ort, förlag, år, upplaga, sidor
ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD, 2018
Nyckelord
Probabilistic modelling, Bayesian methods, Nonlinear system identification, Sequential Monte Carlo, Particle filter, Approximate Bayesian computations, Highly informative observations, Tempering, Wiener-Hammerstein model
Nationell ämneskategori
Sannolikhetsteori och statistik
Identifikatorer
urn:nbn:se:liu:diva-159808 (URN)10.1016/j.ymssp.2017.09.016 (DOI)000423652800057 ()
Forskningsfinansiär
Vetenskapsrådet, 621-2013-5524, 2016-04278, 621-2016-06079Stiftelsen för strategisk forskning (SSF), RIT15-0012
Tillgänglig från: 2018-05-15 Skapad: 2019-08-22 Senast uppdaterad: 2019-08-23
Schön, T. B., Svensson, A., Murray, L. & Lindsten, F. (2018). Probabilistic learning of nonlinear dynamical systems using sequential Monte Carlo. Mechanical systems and signal processing, 104, 866-883
Öppna denna publikation i ny flik eller fönster >>Probabilistic learning of nonlinear dynamical systems using sequential Monte Carlo
2018 (Engelska)Ingår i: Mechanical systems and signal processing, ISSN 0888-3270, E-ISSN 1096-1216, Vol. 104, s. 866-883Artikel i tidskrift (Refereegranskat) Published
Abstract [en]

Probabilistic modeling provides the capability to represent and manipulate uncertainty in data, models, predictions and decisions. We are concerned with the problem of learning probabilistic models of dynamical systems from measured data. Specifically, we consider learning of probabilistic nonlinear state-space models. There is no closed-form solution available for this problem, implying that we are forced to use approximations. In this tutorial we will provide a self-contained introduction to one of the state-of-the-art methods the particle Metropolis-Hastings algorithm which has proven to offer a practical approximation. This is a Monte Carlo based method, where the particle filter is used to guide a Markov chain Monte Carlo method through the parameter space. One of the key merits of the particle Metropolis-Hastings algorithm is that it is guaranteed to converge to the "true solution" under mild assumptions, despite being based on a particle filter with only a finite number of particles. We will also provide a motivating numerical example illustrating the method using a modeling language tailored for sequential Monte Carlo methods. The intention of modeling languages of this kind is to open up the power of sophisticated Monte Carlo methods including particle Metropolis-Hastings to a large group of users without requiring them to know all the underlying mathematical details.

Ort, förlag, år, upplaga, sidor
ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD, 2018
Nyckelord
Probabilistic modeling, Nonlinear dynamical systems, System identification, Parameter estimation, Bayesian methods, Metropolis-Hastings, Sequential Monte Carlo, Particle filter
Nationell ämneskategori
Sannolikhetsteori och statistik
Identifikatorer
urn:nbn:se:liu:diva-159809 (URN)10.1016/j.ymssp.2017.10.033 (DOI)000423652800054 ()
Forskningsfinansiär
Vetenskapsrådet, 621-2013-5524, 201604278, 621-2016-06079Stiftelsen för strategisk forskning (SSF), RIT15-0012
Tillgänglig från: 2018-05-14 Skapad: 2019-08-22 Senast uppdaterad: 2019-08-23
Jacob, P., Lindsten, F. & Schön, T. B. (2018). Retracted article: Smoothing with Couplings of Conditional Particle Filters. Journal of the American Statistical Association
Öppna denna publikation i ny flik eller fönster >>Retracted article: Smoothing with Couplings of Conditional Particle Filters
2018 (Engelska)Ingår i: Journal of the American Statistical Association, ISSN 0162-1459, E-ISSN 1537-274XArtikel i tidskrift (Refereegranskat) Epub ahead of print
Abstract [en]

In state space models, smoothing refers to the task of estimating a latent stochastic process given noisy measurements related to the process. We propose an unbiased estimator of smoothing expectations. The lack-of-bias property has methodological benefits: independent estimators can be generated in parallel, and confidence intervals can be constructed from the central limit theorem to quantify the approximation error. To design unbiased estimators, we combine a generic debiasing technique for Markov chains, with a Markov chain Monte Carlo algorithm for smoothing. The resulting procedure is widely applicable and we show in numerical experiments that the removal of the bias comes at a manageable increase in variance. We establish the validity of the proposed estimators under mild assumptions. Numerical experiments are provided on toy models, including a setting of highly-informative observations, and for a realistic Lotka-Volterra model with an intractable transition density.

Ort, förlag, år, upplaga, sidor
Taylor & Francis, 2018
Nationell ämneskategori
Sannolikhetsteori och statistik
Identifikatorer
urn:nbn:se:liu:diva-159811 (URN)10.1080/01621459.2018.1505625 (DOI)
Forskningsfinansiär
Stiftelsen för strategisk forskning (SSF), RIT15-0012Vetenskapsrådet, 2016-04278Vetenskapsrådet, 621-2016-06079
Anmärkning

Statement of Retraction

We, the Authors, Editors, and Publishers of the Journal of the American Statistical Association, have retracted the following article:

P. E. Jacob, F. Lindsten, T. B. Schön. “Smoothing with Couplings of Conditional Particle Filters,” the Journal of the American Statistical Association. Published Online 6 August 2018. DOI: 10.1080/01621459.2018.1505625.

Following publication on the Latest Articles page of the journal's website, it came to light that there existed a bug in the code used to produce the numbers initially presented in the retracted version. The results themselves remain the same, and not a word will have been changed when the article publishes in final form. The final article will be the version of record in good standing.

We have been informed in our decision-making by our policy on publishing ethics and integrity and the COPE guidelines on retractions.

Tillgänglig från: 2019-08-22 Skapad: 2019-08-22 Senast uppdaterad: 2019-08-22
Singh, S. S., Lindsten, F. & Moulines, E. (2017). Blocking strategies and stability of particle Gibbs samplers. Biometrika, 104(4), 953-969
Öppna denna publikation i ny flik eller fönster >>Blocking strategies and stability of particle Gibbs samplers
2017 (Engelska)Ingår i: Biometrika, ISSN 0006-3444, E-ISSN 1464-3510, Vol. 104, nr 4, s. 953-969Artikel i tidskrift (Refereegranskat) Published
Abstract [en]

Sampling from the posterior probability distribution of the latent states of a hidden Markov model is nontrivial even in the context of Markov chain Monte Carlo. To address this, Andrieu et al. (2010) proposed a way of using a particle filter to construct a Markov kernel that leaves the posterior distribution invariant. Recent theoretical results have established the uniform ergodicity of this Markov kernel and shown that the mixing rate does not deteriorate provided the number of particles grows at least linearly with the number of latent states. However, this gives rise to a cost per application of the kernel that is quadratic in the number of latent states, which can be prohibitive for long observation sequences. Using blocking strategies, we devise samplers that have a stable mixing rate for a cost per iteration that is linear in the number of latent states and which are easily parallelizable.

Ort, förlag, år, upplaga, sidor
Oxford University Press, 2017
Nyckelord
Hidden Markov model, Markov chain Monte Carlo, Particle filter, Particle Gibbs sampling
Nationell ämneskategori
Sannolikhetsteori och statistik
Identifikatorer
urn:nbn:se:liu:diva-159812 (URN)10.1093/biomet/asx051 (DOI)000417325200013 ()
Forskningsfinansiär
Vetenskapsrådet
Tillgänglig från: 2019-08-22 Skapad: 2019-08-22 Senast uppdaterad: 2019-08-23
Lindsten, F., Bunch, P., Särkkä, S., Schön, T. B. & Godsill, S. J. (2016). Rao–Blackwellized particle smoothers for conditionally linear Gaussian models. IEEE Journal on Selected Topics in Signal Processing, 10(2), 353-365
Öppna denna publikation i ny flik eller fönster >>Rao–Blackwellized particle smoothers for conditionally linear Gaussian models
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2016 (Engelska)Ingår i: IEEE Journal on Selected Topics in Signal Processing, ISSN 1932-4553, E-ISSN 1941-0484, Vol. 10, nr 2, s. 353-365Artikel i tidskrift (Refereegranskat) Published
Abstract [en]

Sequential Monte Carlo (SMC) methods, such as the particle filter, are by now one of the standard computational techniques for addressing the filtering problem in general state-space models. However, many applications require post-processing of data offline. In such scenarios the smoothing problem-in which all the available data is used to compute state estimates-is of central interest. We consider the smoothing problem for a class of conditionally linear Gaussian models. We present a forward-backward-type Rao-Blackwellized particle smoother (RBPS) that is able to exploit the tractable substructure present in these models. Akin to the well known Rao-Blackwellized particle filter, the proposed RBPS marginalizes out a conditionally tractable subset of state variables, effectively making use of SMC only for the “intractable part” of the model. Compared to existing RBPS, two key features of the proposed method are: 1) it does not require structural approximations of the model, and 2) the aforementioned marginalization is done both in the forward direction and in the backward direction.

Ort, förlag, år, upplaga, sidor
IEEE, 2016
Nyckelord
—Monte Carlo methods, particle filters, particle smoothers, Rao-Blackwellization, backward sampling
Nationell ämneskategori
Signalbehandling Reglerteknik
Identifikatorer
urn:nbn:se:liu:diva-159814 (URN)10.1109/JSTSP.2015.2506543 (DOI)000370957200011 ()
Forskningsfinansiär
Vetenskapsrådet, 637-2014-466Vetenskapsrådet, 621-2013-5524
Tillgänglig från: 2016-02-12 Skapad: 2019-08-22 Senast uppdaterad: 2019-08-23
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