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Hemm-Ode, Simone
Alternative names
Publications (10 of 16) Show all publications
Vogel, D., Wårdell, K., Coste, J., Lemaire, J.-J. & Hemm, S. (2021). Atlas Optimization for Deep Brain Stimulation. In: Jarm T., Cvetkoska A., Mahnic-Kalamiza S., Miklavcic D. (Ed.), 8th European Medical and Biological Engineering Conference: . Paper presented at 8th European Medical and Biological Engineering Conference, EMBEC 2020, 29 November 2020 through 3 December 2020 (pp. 130-142). Springer Science and Business Media Deutschland GmbH
Open this publication in new window or tab >>Atlas Optimization for Deep Brain Stimulation
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2021 (English)In: 8th European Medical and Biological Engineering Conference / [ed] Jarm T., Cvetkoska A., Mahnic-Kalamiza S., Miklavcic D., Springer Science and Business Media Deutschland GmbH , 2021, p. 130-142Conference paper, Published paper (Refereed)
Abstract [en]

Electrical stimulation of the deep parts of the brain is the standard answer for patients subject to drug-refractory movement disorders. Collective analysis of data collected during surgeries are crucial in order to provide more systematic planning assistance and understanding the physiological mechanisms of action. To that end, the process of normalizing anatomies captured with Magnetic Resonance imaging across patients is a key component. In this work, we present the optimization of a workflow designed to create group-specific anatomical templates: a group template is refined iteratively using the results of successive non-linear image registrations with refinement steps in the in the basal-ganglia area. All non-linear registrations were executed using the Advanced Normalization Tools (ANTs) and the quality of the normalization was measured using spacial overlap of anatomical structures manually delineated during the planning of the surgery. The parameters of the workflow evaluated were: the use of multiple modalities sequentially or together during each registration to the template, the number of iterations in the template creation and the fine settings of the non-linear registration tool. Using the T1 and white matter attenuated inverse recovery modalities (WAIR) together produced the best results, especially in the center of the brain. The optimal numbers of iterations of the template creation were higher than those from the literature and our previous works. Finally, the setting of the non-linear registration tool that improved results the most was the activation of the registration with the native voxel sizes of images, as opposed to down-sampled version of the images. The normalization process was optimized over our previous study and allowed to obtain the best possible anatomical normalization of this specific group of patient. It will be used to summarize and analyze peri-operative measurements during test stimulation. The aim is that the conclusions obtained from this analysis will be useful for assistance during the planning of new surgeries. © 2021, Springer Nature Switzerland AG.

Place, publisher, year, edition, pages
Springer Science and Business Media Deutschland GmbH, 2021
Series
IFMBE Proceedings, ISSN 1680-0737, E-ISSN 1433-9277 ; 80
Keywords
Atlas, Deep Brain Stimulation (DBS), Movement disorders, Optimisation, Patient normalization, Registration, Biochemical engineering, Image enhancement, Magnetic resonance imaging, Surgery, Anatomical structures, Deep brain stimulation, Electrical stimulations, Multiple modalities, Normalization process, Number of iterations, Physiological mechanisms, Systematic planning, Surgical equipment
National Category
Radiology, Nuclear Medicine and Medical Imaging
Identifiers
urn:nbn:se:liu:diva-173721 (URN)10.1007/978-3-030-64610-3_16 (DOI)001327090600016 ()2-s2.0-85097629073 (Scopus ID)9783030646097 (ISBN)9783030646103 (ISBN)
Conference
8th European Medical and Biological Engineering Conference, EMBEC 2020, 29 November 2020 through 3 December 2020
Note

Funding agencies: Swedish Foundation for Strategic Research (SSF BD15-0032), Swedish Research Council (VR 2016-03564), and the University of Applied Sciences and Arts Northwestern Switzerland (FHNW).

Available from: 2021-03-23 Created: 2021-03-23 Last updated: 2024-11-28Bibliographically approved
Vogel, D., Wårdell, K., Coste, J., Lemaire, J.-J. & Hemm, S. (2020). Atlas Optimization for Deep Brain Stimulation. In: Tomaž Jarm, Samo Mahnič-Kalamiza, Aleksandra Cvetkoska, Damijan Miklavčič (Ed.), Abstract book: . Paper presented at 8th 8th European Medical and Biological Engineering Conference (EMBEC 2020), 29 Nov. - 3 Dec. 2020, Portorož, Slovenia (pp. 69-69). Založba FE
Open this publication in new window or tab >>Atlas Optimization for Deep Brain Stimulation
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2020 (English)In: Abstract book / [ed] Tomaž Jarm, Samo Mahnič-Kalamiza, Aleksandra Cvetkoska, Damijan Miklavčič, Založba FE , 2020, p. 69-69Conference paper, Oral presentation with published abstract (Other academic)
Abstract [en]

Electrical stimulation of the deep parts of the brain is the standard answer for patients subject to drug-refractory movement disorders. Collective analysis of data collected during surgeries are crucial in order to provide more systematic planning assistance and understanding the physiological mechanisms of action. To that end, the process of normalizing anatomies captured with Magnetic Resonance imaging across patients is a key component. In this work, we present the optimization of a workflow designed to create group specific anatomical templates: a group template is refined iteratively using the results of successive non-linear image registrations. I norder to improve the results in the basal-ganglia area, the process is refined in this specific volume of interest. All non-linear registrations were executed using the Advanced Normalization Tools (ANTs). The quality of the normalization was measured using the manual delineation of anatomical structures produced during the planning of the surgery and their spacial overlap after trans- formation in the template space by means of Dice coefficient and mean surface distance. The parameters of the workflow evaluated were: the use of multiple modalities sequentially or together during each registration to the template, the number of iterations in the template creation and the fine settings of the non-linear registration tool. Using the T1 and white matter attenuated inverse recovery modalities together produced the best results, especially in the center of the brain. The optimal numbers of iterations of the template creation were higher than those advised in the literature and our previous works. Finally, the setting of the nonlinear registration tool that improved results the most was the activation of the registrationwith the native voxel sizes of images, as opposed to down-sampled version of the images. Theuse of the delineation of the anatomical structures as a mean to measure the quality of the anatomical template of a group of patient allowed to optimize the normalization process and obtain the best possible anatomical normalization of this specific group of patient. The most crucial points were the combination of multiple modalities in order to maximize the quality of information available during image registration and the activation of the registration with native voxel size. The anatomical template of the group will be used to summarize and analyze peri-operative measurements during test stimulation. The aim is that the conclusions obtained from this analysis will be useful for assistance during the planning of new surgeries.

Place, publisher, year, edition, pages
Založba FE, 2020
National Category
Radiology, Nuclear Medicine and Medical Imaging
Identifiers
urn:nbn:se:liu:diva-174603 (URN)9789612434113 (ISBN)
Conference
8th 8th European Medical and Biological Engineering Conference (EMBEC 2020), 29 Nov. - 3 Dec. 2020, Portorož, Slovenia
Note

Conference cancelled due to Covid-19.

Available from: 2021-03-25 Created: 2021-03-25 Last updated: 2021-12-29Bibliographically approved
Vogel, D., Shah, A., Coste, J., Lemair, J.-J., Wårdell, K. & Hemm, S. (2020). Optimization of group-specific template generation for deep brain stimulation. In: : . Paper presented at The Nordic Baltic Conference on Biomedical Engineering and Medical Physics, 18-20 Sept. 2020, Reykjavik, Iceland.
Open this publication in new window or tab >>Optimization of group-specific template generation for deep brain stimulation
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2020 (English)Conference paper, Oral presentation only (Other academic)
National Category
Neurology Medical Imaging
Identifiers
urn:nbn:se:liu:diva-174591 (URN)
Conference
The Nordic Baltic Conference on Biomedical Engineering and Medical Physics, 18-20 Sept. 2020, Reykjavik, Iceland
Available from: 2021-03-25 Created: 2021-03-25 Last updated: 2025-02-09Bibliographically approved
Vogel, D., Ashesh, S., Wårdell, K. & Hemm-Ode, S. (2019). Comparison of non-linear registration tools for normalization of structures of the deep brain. In: : . Paper presented at MTdagarna, Linköping, Oct. 2-3 2019.
Open this publication in new window or tab >>Comparison of non-linear registration tools for normalization of structures of the deep brain
2019 (English)Conference paper, Oral presentation only (Other academic)
National Category
Radiology, Nuclear Medicine and Medical Imaging
Identifiers
urn:nbn:se:liu:diva-174609 (URN)
Conference
MTdagarna, Linköping, Oct. 2-3 2019
Available from: 2021-03-25 Created: 2021-03-25 Last updated: 2021-12-29Bibliographically approved
Wårdell, K., Zsigmond, P., Richter, J. & Hemm, S. (2018). Optical Guidance System for Deep Brain Stimulation Surgery: from Experimental Studies to Clinical Use. In: Biophotonics Congress: Biomedical Optics Congress 2018: . Paper presented at Biophotonics Congress: Biomedical Optics Congress, The Diplomat Beach Resort, Hollywood, Florida USA, 3–6 April 2018. Optica Publishing Group, Article ID CTh2B.3.
Open this publication in new window or tab >>Optical Guidance System for Deep Brain Stimulation Surgery: from Experimental Studies to Clinical Use
2018 (English)In: Biophotonics Congress: Biomedical Optics Congress 2018, Optica Publishing Group , 2018, article id CTh2B.3Conference paper, Oral presentation with published abstract (Refereed)
Abstract [en]

Laser Doppler flowmetry (LDF) has been adapted for optical guidance during stereotactic deep brain stimulation (DBS) surgery. It has been used in more than 130 DBS implantations. The necessary steps to go from experimental studies to clinical use in the neurosurgical setting are reviewed.

Place, publisher, year, edition, pages
Optica Publishing Group, 2018
Series
Optics Infobase conference papers series, E-ISSN 2162-2701
National Category
Other Medical Engineering
Identifiers
urn:nbn:se:liu:diva-147678 (URN)10.1364/TRANSLATIONAL.2018.CTh2B.3 (DOI)2-s2.0-85047514280 (Scopus ID)9781943580415 (ISBN)
Conference
Biophotonics Congress: Biomedical Optics Congress, The Diplomat Beach Resort, Hollywood, Florida USA, 3–6 April 2018
Funder
Swedish Research Council, 621-2013-6078Swedish Foundation for Strategic Research, BD15-0032
Available from: 2018-05-04 Created: 2018-05-04 Last updated: 2024-08-26Bibliographically approved
Alonso, F., Vogel, D., Wårdell, K. & Hemm-Ode, S. (2017). Comparison between intraoperative and chronic and deep brain stimulation. In: : . Paper presented at World Society for Stereotactic and Functional Neurosurgery, 17th Quadrennial meeting, Berlin June 26-29, 2017.
Open this publication in new window or tab >>Comparison between intraoperative and chronic and deep brain stimulation
2017 (English)Conference paper, Poster (with or without abstract) (Refereed)
Abstract [en]

INTRODUCTION

The success of the deep brain stimulation (DBS) therapy relies primarily in the localization of the implanted electrode, implying the need of utmost accuracy in the targeting process. Intraoperative microelectrode recording and stimulation tests are a common procedure before implanting the permanent DBS lead to determine the optimal position with a large therapeutic window where side effects are avoided and the best improvement of the symptoms is achieved. Differences in dimensions and operating modes exist between the exploration and the permanent DBS electrode which might lead to different stimulation fields, even when ideal placement is achieved. The aim of this investigation is to compare the electric field (EF) distribution around the intraoperative and the chronic electrode, assuming that both have exactly the same position.

METHODS

3D models of the intraoperative exploration electrode and the chronically implanted DBS lead 3389 (Medtronic Inc., USA) were developed using COMSOL 5.2 (COMSOL AB, Sweden). Patient-specific MR images were used to determine the conductive medium around the electrode. The exploration electrode and the first DBS contact were set to current and voltage respectively (0.2mA(V) - 3 mA(V) in 0.1 mA(V) steps). The intraoperative model included the grounded guide tube used to introduce the exploration electrode; for the chronic DBS model, the outer boundaries were grounded and the inactive contacts were set to floating potential considering a monopolar configuration. The localization of the exploration and the chronic electrode was set according to the planned trajectory. The EF was visualized and compared in terms of volume and extension using a fixed isocontour of 0.2 V/mm.

RESULTS

The EF distribution simulated for the exploration electrode showed the influence of the parallel trajectory and the grounded guide tube. For an amplitude of e.g. 2 mA/2 V, the EF extension of the intraoperative was 0.6 mm larger than the chronic electrode at the target level; the corresponding difference in volume was 76.1 mm3.

CONCLUSION

Differences in the EF shape between the exploration and the chronic DBS electrode have been observed using patient-specific models. The larger EF extension obtained for the exploration electrode responds to its higher impedance and the use of current controlled stimulation. The presence of EF around the guide tube and the influence of the parallel trajectory require further experimental and clinical evaluation.

National Category
Medical Engineering
Identifiers
urn:nbn:se:liu:diva-139880 (URN)
Conference
World Society for Stereotactic and Functional Neurosurgery, 17th Quadrennial meeting, Berlin June 26-29, 2017
Available from: 2017-08-21 Created: 2017-08-21 Last updated: 2021-12-29
Shah, A., Alonso, F., Lemarie, J.-J., Pison, D., Coste, J., Wårdell, K., . . . Hemm-Ode, S. (2017). Learning more about the optimal anatomical position for deep brain stimulation in essential tremor patients: 3D visualisation of intraoperative stimulation test results. In: : . Paper presented at World Society for Stereotactic and Functional Neurosurgery, 17th Quadrennial meeting, Berlin June 26-29, 2017.
Open this publication in new window or tab >>Learning more about the optimal anatomical position for deep brain stimulation in essential tremor patients: 3D visualisation of intraoperative stimulation test results
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2017 (English)Conference paper, Poster (with or without abstract) (Refereed)
Abstract [en]

INTRODUCTION

The outcome of deep brain stimulation (DBS) depends heavily on the position of the implanted lead. After a preoperative anatomical planning, most groups collect numerous intraoperative data such as therapeutic effects induced by stimulation tests. To choose the final implant position, physicians “mentally” visualise all available data. The aim of the present work was to develop a method visualising intraoperative stimulation test results, patient’s images, electric field (EF) simulations for the patient-specific stimulation conditions and the corresponding therapeutic effects quantitatively evaluated by accelerometry. The application to five essential tremor (ET) patients should give a first idea about the optimal target position. 

METHODS

In Clermont-Ferrand University Hospital the anatomic target structure and the neighbouring structures were manually outlined, a target and a trajectory defined and two parallel trajectories per hemisphere intraoperatively evaluated. Stimulation tests were performed at 7 to 8 positions per trajectory and several stimulation current amplitudes. The therapeutic effect was evaluated using a previously published method based on accelerometry. Finite element models and simulations were performed for up to three stimulation amplitudes per position and EF isosurfaces (0.2V/mm) were extracted. For the 3D visualization of the numerous overlapping isosurfaces, we generated “improvement maps” by assigning to each voxel within the isosurfaces the highest tremor improvement. Those maps were visualized together with anatomical images, delineated structures and trajectories (Paraview, Kitware Inc). The method was applied to 5 ET patients implanted in the ventro-intermediate nucleus of the thalamus (VIM). Results were analysed by the neurosurgeon regarding the optimal implant position.  

RESULTS

The clinical teams were able to identify the optimal implant position for all patients with more ease and in less time compared to the routine discussion using pen and paper. Additionally, for 7 of the 9 improvement maps, the highest improvement region was found to be in the posterior subthalamic area, inferior and posterior to the VIM.

CONCLUSION

Improvement maps assist the clinicians in determining the optimal implant location of the chronic DBS lead. Results support findings of other studies that the fibre tracts in the posterior subthalamic area like prelemniscal radiations may be responsible for alleviating tremor in ET patients.

National Category
Medical Engineering
Identifiers
urn:nbn:se:liu:diva-139878 (URN)
Conference
World Society for Stereotactic and Functional Neurosurgery, 17th Quadrennial meeting, Berlin June 26-29, 2017
Available from: 2017-08-21 Created: 2017-08-21 Last updated: 2017-08-21
Wårdell, K., Hemm-Ode, S., Rejmstad, P. & Zsigmond, P. (2016). High-Resolution Laser Doppler Measurements of Microcirculation in the Deep Brain Structures: A Method for Potential Vessel Tracking.. Stereotactic and Functional Neurosurgery, 94(1), 1-9
Open this publication in new window or tab >>High-Resolution Laser Doppler Measurements of Microcirculation in the Deep Brain Structures: A Method for Potential Vessel Tracking.
2016 (English)In: Stereotactic and Functional Neurosurgery, ISSN 1011-6125, E-ISSN 1423-0372, Vol. 94, no 1, p. 1-9Article in journal (Refereed) Published
Abstract [en]

BACKGROUND: Laser Doppler flowmetry (LDF) can be used to measure cerebral microcirculation in relation to stereotactic deep brain stimulation (DBS) implantations.

OBJECTIVE: To investigate the microcirculation and total light intensity (TLI) corresponding to tissue grayness in DBS target regions with high-resolution LDF recordings, and to define a resolution which enables detection of small vessels.

METHODS: Stereotactic LDF measurements were made prior to DBS implantation with 0.5-mm steps in the vicinity to 4 deep brain targets (STN, GPi, Vim, Zi) along 20 trajectories. The Mann-Whitney U test was used to compare the microcirculation and TLI between targets, and the measurement resolution (0.5 vs. 1 mm). The numbers of high blood flow spots along the trajectories were calculated.

RESULTS: There was a significant difference (p < 0.05) in microcirculation between the targets. High blood flow spots were present at 15 out of 510 positions, 7 along Vim and GPi trajectories, respectively. There was no statistical difference between resolutions even though both local blood flow and TLI peaks could appear at 0.5-mm steps.

CONCLUSIONS: LDF can be used for online tracking of critical regions presenting blood flow and TLI peaks, possibly relating to vessel structures and thin laminas along stereotactic trajectories.

Place, publisher, year, edition, pages
S. Karger, 2016
Keywords
Deep brain stimulation · Laser Doppler flowmetry ·Stereotactic neurosurgery · Microcirculation · Navigation
National Category
Biomedical Laboratory Science/Technology Neurology
Identifiers
urn:nbn:se:liu:diva-124691 (URN)10.1159/000442894 (DOI)000373869900001 ()26795207 (PubMedID)
Note

Funding agencies:  Swedish Research Council [621-2013-6078]; Parkinson Foundation at Linkoping University; Swiss National Science Foundation [205321-135285]

Available from: 2016-02-10 Created: 2016-02-10 Last updated: 2017-11-30Bibliographically approved
Alonso, F., Hemm-Ode, S. & Wårdell, K. (2015). Influence on Deep Brain Stimulation from Lead Design, Operating Mode and Tissue Impedance Changes – A Simulation Study. Brain Disorders and Therapy, 4(3), Article ID 1000169.
Open this publication in new window or tab >>Influence on Deep Brain Stimulation from Lead Design, Operating Mode and Tissue Impedance Changes – A Simulation Study
2015 (English)In: Brain Disorders and Therapy, ISSN 2168-975X, Vol. 4, no 3, article id 1000169Article in journal (Refereed) Published
Abstract [en]

Background: Deep brain stimulation (DBS) systems in current mode and new lead designs are recently available. To switch between DBS-systems remains complicated as clinicians may lose their reference for programming. Simulations can help increase the understanding.

Objective: To quantitatively investigate the electric field (EF) around two lead designs simulated to operate in voltage and current mode under two time points following implantation.

Methods: The finite element method was used to model Lead 3389 (Medtronic) and 6148 (St Jude) with homogenous surrounding grey matter and a peri-electrode space (PES) of 250 μm. The PES-impedance mimicked the acute (extracellular fluid) and chronic (fibrous tissue) time-point. Simulations at different amplitudes of voltage and current (n=236) were performed using two different contacts. Equivalent current amplitudes were extracted by matching the shape and maximum EF of the 0.2 V/mm isolevel.

Results: The maximum EF extension at 0.2 V/mm varied between 2-5 mm with a small difference between the leads. In voltage mode EF increased about 1 mm at acute compared to the chronic PES. Current mode presented the opposite relationship. Equivalent EFs for lead 3389 at 3 V were found for 7 mA (acute) and 2.2 mA (chronic).

Conclusions: Simulations showed a major impact on the electric field extension between postoperative time points. This may explain the clinical decisions to reprogram the amplitude weeks after implantation. Neither the EF extension nor intensity is considerably influenced by the lead design.

Place, publisher, year, edition, pages
Los Angeles, CA, USA: Omics Publishing Group, 2015
Keywords
deep brain stimulation (DBS), voltage and current stimulation, finite element method
National Category
Other Electrical Engineering, Electronic Engineering, Information Engineering
Identifiers
urn:nbn:se:liu:diva-120680 (URN)10.4172/2168-975X.1000169 (DOI)
Funder
Swedish Research Council, 621-2013-6078
Available from: 2015-08-21 Created: 2015-08-20 Last updated: 2018-09-10Bibliographically approved
Wårdell, K., Haj-Hosseini, N. & Hemm-Ode, S. (2014). Comparison between Optical and MRI Trajectories in Stereotactic Neurosurgery. In: Laura M. Roa Romero (Ed.), XIII Mediterranean Conference on Medical and Biological Engineering and Computing 2013 : MEDICON 2013, 25 - 28 September 2013, Seville, Spain: . Paper presented at XIII Mediterranean Conference on Medical and Biological Engineering and Computing (pp. 49-51).
Open this publication in new window or tab >>Comparison between Optical and MRI Trajectories in Stereotactic Neurosurgery
2014 (English)In: XIII Mediterranean Conference on Medical and Biological Engineering and Computing 2013 : MEDICON 2013, 25 - 28 September 2013, Seville, Spain / [ed] Laura M. Roa Romero, 2014, p. 49-51Conference paper, Published paper (Refereed)
Abstract [en]

Deep brain stimulation (DBS) is an effective treatment for movement disorders e.g. Parkinson's disease. Thin electrodes are implanted into the deep brain structures by means of stereotactic technique and electrical stimulations are delivered to the brain tissue. Accuracy and safety during the implantation is important for optimal stimulation effect and minimization of bleedings. In addition to microelectrode recording and impedance measurements, intraoperative optical measurements using laser Doppler perfusion monitoring (LDPM) have previously been suggested as guidance tool during stereotactic DBS implantations. In this study we compare optical trajectories, recorded with LDPM ranging from cortex towards the subthalamic nucleus (STN), to the corresponding magnetic resonance imaging (MRI) trajectories. Inversed gray scales from the T2-weighted MRI were used for comparison with the total light intensity (TLI) representing tissue grayness. Both curves followed a general tendency with a deep dip in the vicinity to the left ventricle. MRI trajectories might help in predicting the optical trajectory but further studies including more data and fine tuning of the comparative methodology are required

Series
IFMBE Proceedings, ISSN 1680-0737 ; vol 41
Keywords
Deep brain stimulation; Laser doppler perfusion monitoring; Magnetic resonance imaging; Stereotaxy
National Category
Other Medical Engineering
Identifiers
urn:nbn:se:liu:diva-98652 (URN)10.1007/978-3-319-00846-2_12 (DOI)2-s2.0-84891330524 (Scopus ID)9783319008455 (ISBN)
Conference
XIII Mediterranean Conference on Medical and Biological Engineering and Computing
Available from: 2013-10-10 Created: 2013-10-10 Last updated: 2017-02-03Bibliographically approved
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