liu.seSearch for publications in DiVA
Planned maintenance
A system upgrade is planned for 24/9-2024, at 12:00-14:00. During this time DiVA will be unavailable.
Change search
Link to record
Permanent link

Direct link
Publications (2 of 2) Show all publications
Firouznia, M., Henningsson, M. & Carlhäll, C.-J. (2023). Dataset and code for "FK-means: Automatic Atrial Fibrosis Segmentation using Fractal-guided K-means Clustering with Voronoi-Clipping Feature Extraction of Anatomical Structures": FKmeans for fibrosis segmentation. Linköping University Electronic Press
Open this publication in new window or tab >>Dataset and code for "FK-means: Automatic Atrial Fibrosis Segmentation using Fractal-guided K-means Clustering with Voronoi-Clipping Feature Extraction of Anatomical Structures": FKmeans for fibrosis segmentation
2023 (English)Data set
Alternative title[en]
FKmeans
Abstract [en]

Assessment of left atrial (LA) fibrosis from late gadolinium enhancement (LGE) magnetic resonance imaging (MRI) adds to the management of patients with atrial fibrillation (AF). However, accurate assessment of fibrosis in the LA wall remains challenging. Excluding anatomical structures in the LA proximity using clipping techniques can reduce misclassification of LA fibrosis. A novel FK-means approach for combined automatic clipping and automatic fibrosis segmentation was developed. This approach combines a feature-based Voronoi diagram with a hierarchical 3D K-means fractal-based method. The proposed automatic Voronoi clipping method was applied on LGE MRI data and achieved a Dice score of 0.75, similar as the score obtained by a deep learning method (3D UNet) for clipping (0.74). The automatic fibrosis segmentation method, which utilizes the Voronoi clipping method, achieved a Dice score of 0.76. This outperformed a 3D U-Net method for clipping and fibrosis classification, which had a Dice score of 0.69. Moreover, the proposed automatic fibrosis segmentation method achieved a Dice score of 0.90, using manual clipping of anatomical structures. The findings suggest that the automatic FK-means analysis approach enables reliable LA fibrosis segmentation and that clipping of anatomical structures in the atrial proximity can add to the assessment of atrial fibrosis. 

Place, publisher, year
Linköping University Electronic Press, 2023
Keywords
Fibrosis segmentation, Left atrium, Pulmonary veins, Mitral valve, Clipping, K-means, Deep learning
National Category
Cardiac and Cardiovascular Systems Medical Image Processing
Identifiers
urn:nbn:se:liu:diva-199036 (URN)10.48360/m803-yp37 (DOI)
Note

For access to data and code please contact datamanagement@liu.se for further information.

Available from: 2023-11-08 Created: 2023-11-08 Last updated: 2024-03-11
Henningsson, M. (2022). Cartesian dictionary-based native T-1 and T-2 mapping of the myocardium. Magnetic Resonance in Medicine, 87(5), 2347-2362
Open this publication in new window or tab >>Cartesian dictionary-based native T-1 and T-2 mapping of the myocardium
2022 (English)In: Magnetic Resonance in Medicine, ISSN 0740-3194, E-ISSN 1522-2594, Vol. 87, no 5, p. 2347-2362Article in journal (Refereed) Published
Abstract [en]

Purpose To implement and evaluate a new dictionary-based technique for native myocardial T-1 and T-2 mapping using Cartesian sampling. Methods The proposed technique (Multimapping) consisted of single-shot Cartesian image acquisitions in 10 consecutive cardiac cycles, with inversion pulses in cycle 1 and 5, and T-2 preparation (TE: 30 ms, 50 ms, and 70 ms) in cycles 8-10. Multimapping was simulated for different T-1 and T-2, where entries corresponding to the k-space centers were matched to acquired data. Experiments were performed in a phantom, 16 healthy subjects, and 3 patients with cardiovascular disease. Results Multimapping phantom measurements showed good agreement with reference values for both T-1 and T-2, with no discernable heart-rate dependency for T-1 and T-2 within the range of myocardium. In vivo mean T-1 in healthy subjects was significantly higher using Multimapping (T-1 = 1114 +/- 14 ms) compared to the reference (T-1 = 991 +/- 26 ms) (p < 0.01). Mean Multimapping T-2 (47.1 +/- 1.3 ms) and T-2 spatial variability (5.8 +/- 1.0 ms) was significantly lower compared to the reference (T-2 = 54.7 +/- 2.2 ms, p < 0.001; spatial variability = 8.4 +/- 2.0 ms, p < 0.01). Increased T-1 and T-2 was detected in all patients using Multimapping. Conclusions Multimapping allows for simultaneous native myocardial T-1 and T-2 mapping with a conventional Cartesian trajectory, demonstrating promising in vivo image quality and parameter quantification results.

Place, publisher, year, edition, pages
Wiley, 2022
Keywords
cardiac magnetic resonance fingerprinting; Cartesian sampling; dictionary matching; T-1 mapping; T-2 mapping
National Category
Medical Laboratory and Measurements Technologies
Identifiers
urn:nbn:se:liu:diva-182353 (URN)10.1002/mrm.29143 (DOI)000738746200001 ()34985143 (PubMedID)
Note

Funding Agencies|VetenskapsradetSwedish Research Council [2018-04164]

Available from: 2022-01-19 Created: 2022-01-19 Last updated: 2023-03-10Bibliographically approved
Organisations
Identifiers
ORCID iD: ORCID iD iconorcid.org/0000-0001-6142-3005

Search in DiVA

Show all publications