liu.seSearch for publications in DiVA
Change search
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • harvard1
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • oxford
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf
An Evaluation of XML Storage for Bio-Informatics Data
Linköping University, Department of Computer and Information Science.
2008 (English)Independent thesis Advanced level (degree of Master (Two Years)), 20 credits / 30 HE creditsStudent thesis
Abstract [en]

The aim of this thesis work is to evaluate efficient storage and querying techniques forstoring and querying XML based Bioinformatics data. Many XML based formats areavailable for representing biological data.Presently, many data storage tools along with strong query techniques are in use forhandling XML data. These are categorized into three major types, Relational databases(RDBMS), Native XML databases and XML enabled databases.The test is performed on XML based SBML Data (level 2 version 1). Bioinformatics datahas been stored in different types of databases with the goal of evaluating theperformance of XPATH (Native XML Database, XEDB) and SQL (RDBMS).In case of RDBMS data has been mapped into tables. In case of Native XML databasesand XEDB data has been stored as a whole in an XML variable. Furthermore, severalXPATH is performed on Native XML database and on XEDB. SQL is performed onRDBMS.Our conclusion is that, the performance of XPATH on Native XML database is betterthan that of XEDB. Furthermore, when data is stored in RDBMS, SQL performed bestfor querying specific information.

Place, publisher, year, edition, pages
2008. , 67 p.
National Category
Engineering and Technology
Identifiers
URN: urn:nbn:se:liu:diva-15667ISRN: LIU-IDA/LITH-EX-A--08/040--SEOAI: oai:DiVA.org:liu-15667DiVA: diva2:126901
Subject / course
Computer science (10-credit final thesis, D level)
Presentation
2008-09-15, Al-Khwarizmi, Linköping University, Campus Valla, IDA department, 13:00 (English)
Uppsok
Technology
Supervisors
Examiners
Available from: 2008-11-27 Created: 2008-11-26 Last updated: 2012-04-24Bibliographically approved

Open Access in DiVA

fulltext(306 kB)223 downloads
File information
File name FULLTEXT01.pdfFile size 306 kBChecksum SHA-512
9d77086c61bda3eb9d7a9f168a05def7962f8ce482069ca0cff784c6ec1323acf7d1e7bc956bdcb530ba16c7c7efefaa5dc4e32f2c72bf3e3c84b0a8903e6465
Type fulltextMimetype application/pdf

Search in DiVA

By author/editor
Mazumder, Faruk Hossain
By organisation
Department of Computer and Information Science
Engineering and Technology

Search outside of DiVA

GoogleGoogle Scholar
Total: 223 downloads
The number of downloads is the sum of all downloads of full texts. It may include eg previous versions that are now no longer available

urn-nbn

Altmetric score

urn-nbn
Total: 162 hits
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • harvard1
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • oxford
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf