A cell-free Massive multiple-input multiple-output (MIMO) uplink is considered, where the access points (APs) are connected to a central processing unit (CPU) through limited-capacity wireless microwave links. The quantized version of the weighted signals are available at the CPU, by exploiting the Bussgang decomposition to model the effect of quantization. A closed-form expression for spectral efficiency is derived taking into account the effects of channel estimation error and quantization distortion. The energy efficiency maximization problem is considered with per-user power, backhaul capacity and throughput requirement constraints. To solve this non-convex problem, we decouple the original problem into two sub-problems, namely, receiver filter coefficient design, and power allocation. The receiver filter coefficient design is formulated as a generalized eigenvalue problem whereas a successive convex approximation (SCA) and a heuristic sub-optimal scheme are exploited to convert the power allocation problem into a standard geometric programming (GP) problem. An iterative algorithm is proposed to alternately solve each sub-problem. Complexity analysis and convergence of the proposed schemes are investigated. Numerical results indicate the superiority of the proposed algorithms over the case of equal power allocation.