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Classifying Implant-Bearing Patients via their Medical Histories: a Pre-Study on Swedish EMRs with Semi-Supervised GAN-BERT
Linköping University, Department of Science and Technology, Physics, Electronics and Mathematics. Linköping University, Faculty of Science & Engineering.
RISE Res Inst Sweden, Sweden.
Linköping University, Department of Health, Medicine and Caring Sciences, Division of Diagnostics and Specialist Medicine. Linköping University, Faculty of Medicine and Health Sciences. Region Östergötland, Center for Diagnostics, Medical radiation physics. Linköping University, Center for Medical Image Science and Visualization (CMIV).ORCID iD: 0000-0001-8661-2232
Linköping University, Department of Health, Medicine and Caring Sciences, Division of Diagnostics and Specialist Medicine. Linköping University, Faculty of Medicine and Health Sciences. Region Östergötland, Center for Diagnostics, Medical radiation physics.
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2022 (English)In: LREC 2022: THIRTEEN INTERNATIONAL CONFERENCE ON LANGUAGE RESOURCES AND EVALUATION, EUROPEAN LANGUAGE RESOURCES ASSOC-ELRA , 2022, p. 5428-5435Conference paper, Published paper (Refereed)
Abstract [en]

In this paper, we compare the performance of two BERT-based text classifiers whose task is to classify patients (more precisely, their medical histories) as having or not having implant(s) in their body. One classifier is a fully-supervised BERT classifier. The other one is a semi-supervised GAN-BERT classifier. Both models are compared against a fully-supervised SVM classifier. Since fully-supervised classification is expensive in terms of data annotation, with the experiments presented in this paper, we investigate whether we can achieve a competitive performance with a semi-supervised classifier based only on a small amount of annotated data. Results are promising and show that the semi-supervised classifier has a competitive performance when compared with the fully-supervised classifier.

Place, publisher, year, edition, pages
EUROPEAN LANGUAGE RESOURCES ASSOC-ELRA , 2022. p. 5428-5435
Keywords [en]
text classification; BERT; GAN-BERT; electronic medical records; EMR; clinical text mining
National Category
Other Computer and Information Science
Identifiers
URN: urn:nbn:se:liu:diva-192025ISI: 000889371705059ISBN: 9791095546726 (print)OAI: oai:DiVA.org:liu-192025DiVA, id: diva2:1740911
Conference
13th International Conference on Language Resources and Evaluation (LREC), Marseille, FRANCE, jun 20-25, 2022
Note

Funding Agencies|Vinnova (Swedens innovation agency) [2021-01699]

Available from: 2023-03-02 Created: 2023-03-02 Last updated: 2023-03-02

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Danielsson, BengtLundberg, PeterAl-Abasse, YosefJönsson, ArneEneling, EmmaStridsman, Magnus
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Physics, Electronics and MathematicsFaculty of Science & EngineeringDivision of Diagnostics and Specialist MedicineFaculty of Medicine and Health SciencesMedical radiation physicsCenter for Medical Image Science and Visualization (CMIV)Human-Centered systemsDivision of Biomedical Engineering
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Citation style
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Language
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Output format
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