Single-Cell RNA Analysis Reveals Cell-Intrinsic Functions of CAR T Cells Correlating with Response in a Phase II Study of Lymphoma PatientsShow others and affiliations
2023 (English)In: Clinical Cancer Research, ISSN 1078-0432, E-ISSN 1557-3265, Vol. 29, no 20, p. 4139-4152Article in journal (Refereed) Published
Abstract [en]
Purpose: Although CD19 chimeric antigen receptor T cells (CAR-T) therapy has shown remarkable success in B-cell malignancies, a substantial fraction of patients do not obtain a long-term clinical response. This could be influenced by the quality of the individual CAR-T infusion product. To shed some light on this, clinical outcome was correlated to characteristics of CAR-T infusion products. Patients and Methods: In this phase II study, patients with B-cell lymphoma (n ¼ 23) or leukemia (n ¼ 1) received one or two infusions of third-generation CD19-directed CAR-Ts (2 × 108/m2). The clinical trial was registered at clinicaltrials. gov: NCT03068416. We investigated the transcriptional profile of individual CD19 CAR-T infusion products using targeted single-cell RNA sequencing and multicolor flow cytometry. Results: Two CAR-T infusions were not better than one in the settings used in this study. As for the CAR-T infusion products, we found that effector-like CD8þCAR-Ts with a high polyfunctionality, high cytotoxic and cytokine production profile, and low dysfunctional signature were associated with clinical response. An extended ex vivo expansion time during CAR-T manufacturing negatively influenced the proportion of effector CD8þCAR-Ts in the infusion product. Conclusions: We identified cell-intrinsic characteristics of effector CD8þCAR-Ts correlating with response that could be used as an indicator for clinical outcome. The results in the study also serve as a guide to CAR-T manufacturing practices. ©2023 The Authors; Published by the American Association for Cancer Research.
Place, publisher, year, edition, pages
American Association for Cancer Research Inc. , 2023. Vol. 29, no 20, p. 4139-4152
Keywords [en]
CD19 antigen; CD27 antigen; interleukin 2 receptor alpha; antigen expression; Article; B cell lymphoma; CD8+ T lymphocyte; cell subpopulation; chimeric antigen receptor immunotherapy; clinical article; clinical feature; clinical outcome; cohort analysis; controlled study; correlational study; cytokine production; cytotoxicity; disease association; ex vivo study; flow cytometry; gene cluster; genetic transcription; human; human cell; leukemia; phase 2 clinical trial; phenotype; RNA analysis; single cell analysis; treatment indication
National Category
Immunology in the medical area
Identifiers
URN: urn:nbn:se:liu:diva-200764DOI: 10.1158/1078-0432.CCR-23-0178ISI: 001189711100016PubMedID: 37540566Scopus ID: 2-s2.0-85175294587OAI: oai:DiVA.org:liu-200764DiVA, id: diva2:1835932
Note
Funding Agencies|Swedish Research Council [2019-01326, 2019-01721]; Swedish Cancer Society [19 0184Pj, 20 0756 PjF, 20 1303 PjF]; AFA Insurance for regenerative medicine; Lions Cancer Fund at Uppsala University Hospital; Swedish State Support for Clinical Research; Barncancerfonden [TJ 2019-0014]; Knut and Alice Wallenberg Foundation, National Bioinformatics Infrastructure Sweden at SciLifeLab [KAW 2017.0003]
2024-02-072024-02-072024-12-02