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Representing, storing and accessing molecular interaction data: a review of models and tools
Linköping University, Department of Computer and Information Science, Database and information techniques. Linköping University, The Institute of Technology.
Linköping University, Department of Computer and Information Science, Database and information techniques. Linköping University, The Institute of Technology.
Linköping University, Department of Computer and Information Science, Database and information techniques. Linköping University, The Institute of Technology.
Linköping University, Department of Computer and Information Science, Database and information techniques. Linköping University, The Institute of Technology. (IDA/ADIT)ORCID iD: 0000-0002-9084-0470
2006 (English)In: Briefings in Bioinformatics, ISSN 1467-5463, E-ISSN 1477-4054, Vol. 7, no 4, 331-338 p.Article in journal (Refereed) Published
Abstract [en]

One important aim within systems biology is to integrate disparate pieces of information, leading to discovery of higher-level knowledge about important functionality within living organisms. This makes standards for representation of data and technology for exchange and integration of data important key points for development within the area. In this article, we focus on the recent developments within the field. We compare the recent updates to the three standard representations for exchange of data SBML, PSI MI and BioPAX. In addition, we give an overview of available tools for these three standards and a discussion on how these developments support possibilities for data exchange and integration.

Place, publisher, year, edition, pages
Oxford University Press, 2006. Vol. 7, no 4, 331-338 p.
Keyword [en]
molecular interactions, cellular pathways, standardization, SBML, PSI MI, BioPAX
National Category
Computer Science
Identifiers
URN: urn:nbn:se:liu:diva-35521DOI: 10.1093/bib/bbl039ISI: 000242471000003PubMedID: 17132622Local ID: 27369OAI: oai:DiVA.org:liu-35521DiVA: diva2:256369
Available from: 2009-10-10 Created: 2009-10-10 Last updated: 2017-04-24Bibliographically approved

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Strömbäck, LenaJakoniené, VaidaTan, HeLambrix, Patrick

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