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First-principle DFT and MP2 modeling of infrared reflection - Absorption spectra of oriented helical ethylene glycol oligomers
Bogolyubov Institute for Theoretical Physics, Kiev, Ukraine.
Division of Physics, Luleå University of Technology, S-971 87 Luleå, Sweden.
Linköping University, The Institute of Technology. Linköping University, Department of Physics, Chemistry and Biology.
Linköping University, The Institute of Technology. Linköping University, Department of Physics, Chemistry and Biology, Sensor Science and Molecular Physics .
2005 (English)In: Journal of Physical Chemistry B, ISSN 1520-6106, Vol. 109, no 27, 13221-13227 p.Article in journal (Refereed) Published
Abstract [en]

First-principle modeling is used to obtain a comprehensive understanding of infrared reflection absorption (RA) spectra of helical oligo(ethylene glycol) (OEG) containing self-assembled monolayers (SAMs). Highly ordered SAMs of methyl-terminated 1-thiaoligo(ethylene glycols) [HS(CH2CH 2O)nCH3, n = 5, 6] on gold recently became accessible for systematic infrared analyses [Vanderah et al., Langmuir, 2003, 19, 3752]. We utilized the quoted experimental data to validate the first-principle modeling of infrared RA spectra of HS-(CH2CH 2O)5,6CH3 obtained by (i) DFT methods with gradient corrections (using different basis sets, including 6-311++G* *) and (ii) HF method followed by a Møller-Plesset (MP2) correlation energy correction. In focus are fundamental modes in the fingerprint and CH-stretching regions. The frequencies and relative intensities in the calculated spectra for a single molecule are unambiguously identified with the bands observed in the experimental RA spectra of the corresponding SAMs. In addition to confirming our earlier assignment of the dominating peak in the CH-stretching region to CH2 asymmetric stretching vibrations, all other spectral features observed in that region have received an interpretation consistent (but not in all cases coinciding) with previous investigations. The obtained results provide an improved understanding of the orientation and conformation of the molecular building blocks within OEG-containing assemblies, which, in our opinion, is crucial for being able to predict the folding and phase characteristics and interaction of OEG-SAMs with water and proteins. © 2005 American Chemical Society.

Place, publisher, year, edition, pages
2005. Vol. 109, no 27, 13221-13227 p.
National Category
Engineering and Technology
URN: urn:nbn:se:liu:diva-50460DOI: 10.1021/jp0503765OAI: diva2:271356
Available from: 2009-10-11 Created: 2009-10-11 Last updated: 2011-01-12

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Valiokas, RamunasLiedberg, Bo
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The Institute of TechnologyDepartment of Physics, Chemistry and BiologySensor Science and Molecular Physics
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