Methods for phylogenetic analysis
Independent thesis Advanced level (degree of Master (One Year)), 20 credits / 30 HE creditsStudent thesis
In phylogenetic analysis one study the relationship between different species. By comparing DNA from two different species it is possible to get a numerical value representing the difference between the species. For a set of species, all pair-wise comparisons result in a dissimilarity matrix d.
In this thesis I present a few methods for constructing a phylogenetic tree from d. The common denominator for these methods is that they do not generate a tree, but instead give a connected graph. The resulting graph will be a tree, in areas where the data perfectly matches a tree. When d does not perfectly match a tree, the resulting graph will instead show the different possible topologies, and how strong support they have from the data.
Finally I have tested the methods both on real measured data and constructed test cases.
Place, publisher, year, edition, pages
2010. , 43 p.
phylogenetic trees, tight span, split decomposition
IdentifiersURN: urn:nbn:se:liu:diva-56814ISRN: LiTH-MAT-EX--2010/20--SEOAI: oai:DiVA.org:liu-56814DiVA: diva2:327534
UppsokPhysics, Chemistry, Mathematics
Snellman, Jan, fil.dr.
Snellman, Jan, fil.dr