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Enrichment of ligands with molecular dockings and subsequent characterization for human alcohol dehydrogenase 3
Karolinska Institute.
Linköping University, Department of Physics, Chemistry and Biology, Bioinformatics . Linköping University, The Institute of Technology.
Karolinska Institute.
Karolinska Institute.
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2010 (English)In: CELLULAR AND MOLECULAR LIFE SCIENCES, ISSN 1420-682X, Vol. 67, no 17, 3005-3015 p.Article in journal (Refereed) Published
Abstract [en]

Alcohol dehydrogenase 3 (ADH3) has been assigned a role in nitric oxide homeostasis due to its function as an S-nitrosoglutathione reductase. As altered S-nitrosoglutathione levels are often associated with disease, compounds that modulate ADH3 activity might be of therapeutic interest. We performed a virtual screening with molecular dockings of more than 40,000 compounds into the active site of human ADH3. A novel knowledge-based scoring method was used to rank compounds, and several compounds that were not known to interact with ADH3 were tested in vitro. Two of these showed substrate activity (9-decen-1-ol and dodecyltetraglycol), where calculated binding scoring energies correlated well with the logarithm of the k (cat)/K (m) values for the substrates. Two compounds showed inhibition capacity (deoxycholic acid and doxorubicin), and with these data three different lines for specific inhibitors for ADH3 are suggested: fatty acids, glutathione analogs, and cholic acids.

Place, publisher, year, edition, pages
Springer Science Business Media , 2010. Vol. 67, no 17, 3005-3015 p.
Keyword [en]
Alcohol dehydrogenase, Enzyme kinetics, Inhibitors, Molecular docking, S-Nitrosoglutathione, Virtual screening
National Category
Engineering and Technology
Identifiers
URN: urn:nbn:se:liu:diva-58964DOI: 10.1007/s00018-010-0370-2ISI: 000280917900011OAI: oai:DiVA.org:liu-58964DiVA: diva2:347773
Available from: 2010-09-03 Created: 2010-09-03 Last updated: 2010-09-03

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Carlsson, JonasPersson, Bengt

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CiteExportLink to record
Permanent link

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Citation style
  • apa
  • harvard1
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • oxford
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf