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Sequence Variation and Haplotype Structure Surrounding the Flowering Time Locus FRI in Arabidopsis thaliana
Lund University, Sweden.
Lund University, Sweden.
2002 (English)In: Genetics, ISSN 0016-6731, E-ISSN 1943-2631, Vol. 161, no 1, 289-298 p.Article in journal (Refereed) Published
Abstract [en]

Linkage disequilibrium in highly selfing organisms is expected to extend well beyond the scale of individual genes. The pattern of polymorphism in such species must thus be studied over a larger scale. We sequenced 14 short (0.5-1 kb) fragments from a 400-kb region surrounding the flowering time locus FRI in a sample of 20 accessions of Arabidopsis thaliana. The distribution of allele frequencies, as quantified by Tajima’s D, varies considerably over the region and is incompatible with a standard neutral model. The region is characterized by extensive haplotype structure, with linkage disequilibrium decaying over 250 kb. In particular, recombination is evident within 35 kb of FRI in a haplotype associated with a functionally important allele. This suggests that A. thaliana may be highly suitable for linkage disequilibrium mapping.

Place, publisher, year, edition, pages
Genetics Society of America , 2002. Vol. 161, no 1, 289-298 p.
National Category
Genetics
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URN: urn:nbn:se:liu:diva-106323ISI: 000175814900025OAI: oai:DiVA.org:liu-106323DiVA: diva2:715446
Available from: 2014-05-05 Created: 2014-05-05 Last updated: 2017-12-05Bibliographically approved

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Hagenblad, Jenny

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