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Protein-Protein Docking Using Starting Points Based On Structural Homology
Linköping University, Department of Physics, Chemistry and Biology, Bioinformatics.
2015 (English)Independent thesis Advanced level (degree of Master (Two Years)), 20 credits / 30 HE creditsStudent thesis
Abstract [en]

Protein-protein interactions build large networks which are essential in understanding complex diseases. Due to limitations of experimental methodology there are problems with large amounts of false negative and positive interactions; and a large gap in the amount of known interactions and structurally determined interactions. By using computational methods these problems can be alleviated.

In this thesis the quality of a newly developed pipeline (InterPred) were investigated for its ability to generate coarse interaction models and score them. This ability was investigated by performing docking experiments in Rosetta on models generated in InterPred.

The results suggest that InterPred is highly successful in generating good starting points for docking proteins in silico and to distinguish the quality of models.

Place, publisher, year, edition, pages
2015. , 30 p.
Keyword [en]
In silico, Rosetta Dock, Bound docking, PPI, Bioinformatics, InterPred
National Category
Bioinformatics and Systems Biology
Identifiers
URN: urn:nbn:se:liu:diva-122016ISRN: LITH-IFM-G-EX--15/3119--SEOAI: oai:DiVA.org:liu-122016DiVA: diva2:861191
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Examiners
Available from: 2015-10-16 Created: 2015-10-15 Last updated: 2015-10-16Bibliographically approved

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Protein-Protein Docking Using Starting Points Based On Structural Homology(2394 kB)144 downloads
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CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • harvard1
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • oxford
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf