The purpose of the paper is to determine the environmentally safe and economically feasible technology of biofertilizer production from the digestate including dewatering process. Methodological basis is based on the systematic approach to the determination of factors effected on the distribution of nutrients and pollutants between liquidand solid fractions after digestate separation. We studied modern technologies aimed at dewatering the digestateand reduction of its volume, showed their effectiveness. These technologies allow expanding the opportunities forcommercialization of the digestate, increasing the cost of its transportation and application to the soil instead ofcomplex fertilizers, using some valuable products. The results of the study showed that the ecological quality ofthe digestate is the highest as well as co-digested thermally pre-treated feedstock is used for solid-liquid separationin centrifuge with polymer addition as post-treatment approach to the flocculation. In order to increase efficiencyof biofertilizer application the technological scheme of production process of granular fertilizers from digestatewas proposed. Special feature of this scheme is in the use of phosphogypsum binder for the production of organomineral fertilizer that contributes phosphogypsum recycling in the waste management system.

The study aims to define the potential and technological aspects of the digestate treatment for its application as a biofertilizer. Life cycle assessment methodology was used in terms of digestate quality management. The potential of nutrients, organic carbon, and useful microelements in the digestate allows for its consideration as a mineral fertilizer substitute and soil improver. The valorization of digestate as fertilizer requires quality management and quality control. Based on the research focus, the successful soil application of digestate post-treatment technologies was analyzed. Among the different commercial options for digestate treatment and nutrient recovery, the most relevant are drying, struvite precipitation, stripping, evaporation, and membranes technology. Comparing the physical and chemical properties of the whole digestate, separated liquid, and solid liquor fractions showed that in the case of soil application of granular fertilizer, nutrients from the digestate are released more slowly than digestate application without granulation. However, realizing this potential in an economically feasible way requires improving the quality of digestate products through appropriate technologies and quality control of digestate products. To support the manufacture of quality digestate across Europe, the European Compost Network developed a concept for a pan-European quality assurance scheme.

This paper focuses on determining the influence of soil, oil, and environmental factors on the process of oil filtration in a porous medium such as soil. Mathematical modeling of the oil geofiltration process based on classical and modified regularities makes it possible to solve a significant environmental problem associated with predicting the pollution zone due to accidental oil spills. The research methodology is based on the substantiation of theoretical models of oil filtration through porous media, methods for the numerical solution of equations, and computer visualization (ANSYS CFX software). Experimental data supported the verification of the adequacy of the models. Based on obtained results, it was found that all oil flowed into well-permeable sand at a speed of approximately 4-10 -4 m/h. The developed model of the stochastic process of petroleum hydrocarbons geofiltration involved obtaining the output as dependent variables, contamination level, contamination depth, and oil spot borders. Numerical solution and visualization using computer simulation showed the distribution of oil hydrocarbons in the soil in vertical and horizontal directions. The mathematical model allowed to predict the formation of the pollution front and assess the contaminated zone's size.

Summary Magnetotactic bacteria (MTB) comprise a group of motile microorganisms common in most mesothermal aquatic habitats with pH values around neutrality. However, during the last two decades, a number of MTB from extreme environments have been characterized including: cultured alkaliphilic strains belonging to the Deltaproteobacteria class of the Proteobacteria phylum; uncultured moderately thermophilic strains belonging to the Nitrospirae phylum; cultured and uncultured moderately halophilic or strongly halotolerant bacteria affiliated with the Deltaproteobacteria and Gammaproteobacteria classes and an uncultured psychrophilic species belonging to the Alphaproteobacteria class. Here, we used culture-independent techniques to characterize MTB from an acidic freshwater lagoon in Brazil (pH ? 4.4). MTB morphotypes found in this acidic lagoon included cocci, rods, spirilla and vibrioid cells. Magnetite (Fe3O4) was the only mineral identified in magnetosomes of these MTB while magnetite magnetosome crystal morphologies within the different MTB cells included cuboctahedral (present in spirilla), elongated prismatic (present in cocci and vibrios) and bullet-shaped (present in rod-shaped cells). Intracellular pH measurements using fluorescent dyes showed that the cytoplasmic pH was close to neutral in most MTB cells and acidic in some intracellular granules. Based on 16S rRNA gene phylogenetic analyses, some of the retrieved gene sequences belonged to the genus Herbaspirillum within the Betaproteobacteria class of the Proteobacteria phylum. Fluorescent in situ hybridization using a Herbaspirillum-specific probe hybridized with vibrioid MTB in magnetically-enriched samples. Transmission electron microscopy of the Herbaspirillum-like MTB revealed the presence of many intracellular granules and a single chain of elongated prismatic magnetite magnetosomes. Diverse populations of MTB have not seemed to have been described in detail in an acid environment. In addition, this is the first report of an MTB phylogenetically affiliated with Betaproteobacteria class.

A significant proportion of carbon (C) captured by terrestrial primary production is buried in lacustrine ecosystems, which have been substantially affected by anthropogenic activities globally. However, there is a scarcity of sedimentary organic carbon (OC) accumulation information for lakes surrounded by highly productive rainforests at warm tropical latitudes, or in response to land cover and climate change. Here, we combine new data from intensive campaigns spanning 13 lakes across remote Amazonian regions with a broad literature compilation, to produce the first spatially-weighted global analysis of recent OC burial in lakes (over ~50-100-years) that integrates both biome type and forest cover. We find that humid tropical forest lake sediments are a disproportionately important global OC sink of 7.4 Tg C yr−1 with implications for climate change. Further, we demonstrate that temperature and forest conservation are key factors in maintaining massive organic carbon pools in tropical lacustrine sediments.

Coastal eutrophication and urban flooding are increasingly important components of global change. Although increased seawater renewal by barrier openings and channelizing are common mitigation measures in coastal lagoons worldwide, their effects on these ecosystems are not fully understood. Here, we evaluated the re-lationships between human interventions in the watershed, artificial connections to the sea, and the sediment burial rates in an urban coastal lagoon (Maric & PRIME;a lagoon, Southeastern Brazil). Sediment accretion along with nutrient and carbon burial rates were determined in two sediment cores representing the past-120 years (210Pb dating) and associated with anthropogenic changes as indicated by historical records and geoinformation ana-lyses. Lagoon infilling and eutrophication, expressed by the average sediment accretion, TP, TN, and OC burial rates, respectively, increased-9-18, 13-15, 11-14 and 11-12-fold from the earliest (<1950) to the most recent (2000-2017) period. These multi-proxy records confirm mechanistic links between deforestation, urbanization, and untreated sewage discharges. In addition, our findings reveal artificial connections to the sea may contribute to lagoonal eutrophication and infilling, particularly when not integrated with sewage treatment and forest conservation or reforestation in the watershed. Therefore, increased seawater renewal by physical interventions commonly considered as mitigation measures may in contrast cause severe degradation in coastal lagoons, causing harmful consequences that should be not neglected when implementing management practices.

Energy security is a critical global challenge in the transition to sustainable development. Anaerobic digestion (AD) offers a promising renewable energy solution that mitigates environmental impacts. Algae, as biomass feedstock, have shown significant potential for bioenergy production; however, their complex chemical composition poses challenges to the efficiency of the AD process. To address these limitations, various pretreatment methods have been applied to enhance biogas production. In this study, we performed a comprehensive meta-analysis to evaluate the effects of different pretreatments on methane (CH4) yields from both microalgae and macroalgae. Our results demonstrate that biological, physical, and combined chemical-physical pretreatments significantly improve CH4 production in microalgae, with increases of up to 141%, 125%, and 151%, respectively. For macroalgae, physical pretreatments were the most effective, leading to a 129% increase in CH4 yield. We also estimate that utilizing just 10% of the global algal biomass production (3.6 Mt) could generate over 5.5 TWh y-1 of energy. This potential could be doubled with the application of appropriate pretreatment strategies. These findings highlight the role of algae in advancing renewable energy production and contribute to the growing body of knowledge on optimizing AD processes for cleaner energy generation.

Proper pretreatment of organic residues prior to anaerobic digestion (AD) can maximize global biogas production from varying sources without increasing the amount of digestate, contributing to global decarbonization goals. However, the efficiency of pretreatments applied on varying organic streams is poorly assessed. Thus, we performed a meta-analysis on AD studies to evaluate the efficiencies of pretreatments with respect to biogas production measured as methane yield. Based on 1374 observations our analysis shows that pretreatment efficiency is dependent on substrate chemical dominance. Grouping substrates by chemical composition e.g., lignocellulosic-, protein- and lipid-rich dominance helps to highlight the appropriate choice of pretreatment that supports maximum substrate degradation and more efficient conversion to biogas. Methane yield can undergo an impactful increase compared to untreated controls if proper pretreatment of substrates of a given chemical dominance is applied. Non-significant or even adverse effects on AD are, however, observed when the substrate chemical dominance is disregarded.

The textile industry is one of the largest environmental polluters in the world. Although waste management via anaerobic digestion (AD) is a sustainable strategy to transform waste into clean energy and water recovery, the efficiency of the AD process is reduced by the presence of recalcitrant materials, chemicals, and toxic contents. This study aims to investigate the performance of several chemical, physical, and biological pretreatments applied to improve the biodegradability of textile waste. We performed a meta-analysis with 117 data extracted from 13 published articles that evaluated the efficiency of pretreatments applied to textile waste prior to AD to increase biogas production measured as methane (CH4) yield. Even though the majority of the studies have focused on the effect of chemical and physical pretreatments, our results showed that the application of biological pretreatments are more efficient and eco-friendlier. Biological pretreatments can increase CH4 yield by up to 360% with lower environmental risk and lower operating costs, while producing clean energy and a cleaner waste stream. Biological pretreatments also avoid the addition of chemicals and favor the reuse of textile wastewater, decreasing the current demand for clean water and increasing resource circularity in the textile industry.

Anaerobic digestion (AD) is a versatile manure management approach that can combine waste treatment, energy generation and nutrient recovery, thus playing a central role in circular economy. The AD process is highly influenced by manure composition which, depending on the source, may contain high loads recalcitrant materials (e.g., lignocellulosic and fibers) or lead to the formation of toxic compounds (e.g., NH₃), decreasing the energetic potential of the waste and requiring specific pretreatments to increase its degradability and biogas production. Although there are distinctions in the chemical composition of manure according to animal diets, different manure sources are usually grouped together, leading to a suboptimal performance of both the pretreatment and the AD process. Here, we performed a meta-analysis of 54 studies to evaluate the effects of different pretreatments on different manure types and their effect on methane (CH₄) yield and we estimated the energy potential if the appropriate pretreatment is applied to largest manure producing countries. The results showed that chemical and/or biological pretreatments were more effective for omnivore manure (e.g., swine, chicken), while physical and a combination of chemical and physical pretreatments negatively affected CH₄ production. Physical and/or chemical pretreatments had a positive effect on CH₄ yield from herbivore manure (e. g., cattle, horses), while biological pretreatments had a negative effect. The application of the adequate pretreatment can more than double the energy recovered from manure, allowing for an important substitution of fossil fuels, while decreasing operational costs and environmental risks and ultimately improving profitability. The development of pretreatment technologies and their application are strongly related to public policies for sustainable manure management and biogas use and production.

Non-symbiotic globin class #1 (Glb1) genes are expressed in different plant organs, have a high affinity for oxygen, and are related to nitric oxide (NO) turnover. Previous studies showed that soybean Glb1 genes are upregulated in soybean plants under flooding conditions. Herein, the GmGlb1-1 gene was identified in soybean as being upregulated in the nematode-resistant genotype PI595099 compared to the nematode-susceptible cultivar BRS133 during plant parasitism by Meloidogyne incognita. The Arabidopsis thaliana and Nicotiana tabacum transgenic lines overexpressing the GmGlb1-1 gene showed reduced susceptibility to M. incognita. Consistently, gall morphology data indicated that pJ2 nematodes that infected the transgenic lines showed developmental alterations and delayed parasitism progress. Although no significant changes in biomass and seed yield were detected, the transgenic lines showed an elongated, etiolation-like growth under well-irrigation, and also developed more axillary roots under flooding conditions. In addition, transgenic lines showed upregulation of some important genes involved in plant defense response to oxidative stress. In agreement, higher hydrogen peroxide accumulation and reduced activity of reactive oxygen species (ROS) detoxification enzymes were also observed in these transgenic lines. Thus, based on our data and previous studies, it was hypothesized that constitutive overexpression of the GmGlb1-1 gene can interfere in the dynamics of ROS production and NO scavenging, enhancing the acquired systemic acclimation to biotic and abiotic stresses, and improving the cellular homeostasis. Therefore, these collective data suggest that ectopic or nematode-induced overexpression, or enhanced expression of the GmGlb1-1 gene using CRISPR/dCas9 offers great potential for application in commercial soybean cultivars aiming to reduce plant susceptibility to M. incognita.

Methane (CH4), one of the key long-lived atmospheric greenhouse gases, is primarily produced from organic matter. Accordingly, net primary production of organic matter sets the boundaries for CH4 emissions. Plants, being dominant primary producers, are thereby indirectly sustaining most global CH4 emissions, albeit with delays in time and with spatial offsets between plant primary production and subsequent CH4 emission. In addition, plant communities can enhance or hamper ecosystem production, oxidation, and transport of CH4 in multiple ways, e.g., by shaping carbon, nutrient, and redox gradients, and by representing a physical link be-tween zones with extensive CH4 production in anoxic sediments or soils and the atmosphere. This review focuses on how plants and other primary producers influence CH4 emissions with the consequences at ecosystem scales. We outline mechanisms of interactions and discuss flux regulation, quantification, and knowledge gaps across multiple ecosystem examples. Some recently proposed plant-related ecosystem CH4 fluxes are difficult to reconcile with the global atmospheric CH4 budget and the enigmas related to these fluxes are highlighted. Overall, ecosystem CH4 emissions are strongly linked to primary producer communities, directly or indirectly, and properly quantifying magnitudes and regulation of these links are key to predicting future CH4 emissions in a rapidly changing world.

Reaching climate goals depends on appropriate and accurate methods to quantify greenhouse gas (GHG) fluxes and to verify that efforts to mitigate GHG emissions are effective. We here highlight critical advantages, limitations, and needs regarding GHG flux measurement methods, identified from an analysis of >13 500 scientific publications regarding three long-lived GHGs, carbon dioxide (CO2), methane (CH4), and nitrous oxide (N2O). While existing methods are well-suited for assessing atmospheric changes and local fluxes, they are expensive and have limited accessibility. Further, we are typically forced to choose between methods for very local GHG sources and sinks and their regulation (m(2)-scaled measurements), or methods for aggregated net fluxes at >ha or km(2) scales measurements. The results highlight the key need of accessible and affordable GHG flux measurement methods for the many flux types not quantifiable from fossil fuel use, to better verify inventories and mitigation efforts for transparency and accountability under the Paris agreement. The situation also calls for novel methods, capable of quantifying large scale GHG flux patterns while simultaneously distinguishing local source and sink dynamics and reveal flux regulation, representing key knowledge for quantitative GHG flux modeling. Possible strategies to address the identified GHG flux measurement method needs are discussed. The analysis also generated indications of how GHG flux measurements have been distributed geographically and across flux types, which are reported.

Appropriate methods to measure greenhouse gas (GHG) fluxes are critical for our ability to detect fluxes, understand regulation, make adequate priorities for climate change mitigation efforts, and verify that these efforts are effective. Ideally, we need reliable, accessible, and affordable measurements at relevant scales. We surveyed present GHG flux measurement methods, identified from an analysis of >11000 scientific publications and a questionnaire to sector professionals and analysed method pros and cons versus needs for novel methodology. While existing methods are well-suited for addressing certain questions, this presentation presents fundamental limitations relative to GHG flux measurement needs for verifiable and transparent action to mitigate many types of emissions. Cost and non-academic accessibility are key aspects, along with fundamental measurement performance. These method limitations contribute to the difficulties in verifying GHG mitigation efforts for transparency and accountability under the Paris agreement. Resolving this mismatch between method capacity and societal needs is urgently needed for effective climate mitigation. This type of methodological mismatch is common but seems to get high priority in other knowledge domains. The obvious need to prioritize development of accurate diagnosis methods for effective treatments in healthcare is one example. This presentation provides guidance regarding the need to prioritize the development of novel GHG flux measurement methods.

Tropical salt flats typically lack a water column for most of the year, which means that rainfall is probably one of the major factors that regulate benthic microalgae and metabolism in areas subjected to periodic drought. Therefore, the goal of this study was to evaluate the effects of rainfall on the ecological function and community structure of a tropical mangrove salt flat area. This study showed that the highest primary production and respiration fluxes were recorded on the last day of sampling when it rained (-7.6 and 4.7 mmol C-CO2 m(-2) h(-1), respectively). Net primary production increased significantly compared with the dry period that preceded the rain event. The results also suggested that community structure was regulated by rainfall. After the rain event, abundance increased by one order of magnitude, but the diversity and evenness indices decreased. These results demonstrate that rain does have strong regulatory effects on the ecological function and structure of tropical salt flats.

Hypersaline tidal flats (HTFs) are coastal ecosystems with freshwater deficits often occurring in arid or semiarid regions near mangrove supratidal zones with no major fluvial contributions. Here, we estimate that organic carbon (OC), total nitrogen (TN) and total phosphorus (TP) were buried at rates averaging 21 (+/- 6), 1.7 (+/- 0.3) and 1.4 (+/- 0.3) gm(-2) yr(-1), respectively, during the previous century in three contrasting HTF systems, one in Brazil (eutrophic) and two in Australia (oligotrophic). Although these rates are lower than those from nearby mangrove, saltmarsh and seagrass systems, the importance of HTFs as sinks for OC, TN and TP may be significant given their extensive coverage. Despite the measured short-term variability between net air-saltpan CO2 influx and emission estimates found during the dry and wet season in the Brazilian HTF, the only site with seasonal CO2 flux measurements, the OC sedimentary profiles over several decades suggest efficient OC burial at all sites. Indeed, the stable isotopes of OC and TN (delta C-13 and delta N-1(5)) along with C : N ratios show that microphytobenthos are the major source of the buried OC in these HTFs. Our findings highlight a previously unquantified carbon as well as a nutrient sink and suggest that coastal HTF ecosystems could be included in the emerging blue carbon framework.

Abstract Groundwater is a primary source of dissolved CO2 and CH4 in Amazonian headwaters, yet in higher order rivers, a groundwater/pore-water source is difficult to constrain due to the high spatial and temporal heterogeneity of pore-water exchange. Here, we report coupled, high resolution measurements of pCO2, CH4, and 222Rn (a natural pore-water and groundwater tracer) during receding waters in the three major water types of the Central Amazon Basin: black (Negro River); clear (Tapajós River); white (Madeira River). Considerable spatial heterogeneity was observed in pCO2, CH4, and 222Rn concentrations ranging from 460 ?atm to 8030 ?atm, 7 nM to 281 nM, and 713 dpm m?3 to 8516 dpm m?3, respectively. The significant correlations between pCO2 and CH4 to 222Rn in the black and clear waters suggests that pore-water further enhanced CO2 supersaturation by 18?47% and is a driver of CH4 dynamics in these waters.

Digestate processing is a strategy to improve the management of digestate from biogas plants. Solid-liquid separation is usually the primary step and can be followed by advanced treatments of the fractions. The knowledge about the performance of the separators and the quality of the fractions is scattered because of many available techniques and large variability in digestate characteristics. We performed a systematic review and found 175 observations of full-scale solid-liquid separation of digestate. We identified 4 separator groups, 4 digestate classes based on substrate, and distinguished whether chemical conditioners were used. We confirmed the hypothesis that the dominant substrate can affect the efficiency of the digestate separation. Furthermore, the results showed that centrifuges separated significantly more dry matter and total P than screw presses. Use of chemical conditioners in combination with a centrifuge lowered the dry matter concentration in the liquid fraction by 30%. Screw presses consumed 4.5 times less energy than centrifuges and delivered 3.3 tonne ammonium N in the liquid fraction and 0.3 tonne total P in the solid fraction using 1 MWh. The results can provide data for systems analyses of biogas solutions and can support practitioners when choosing among full-scale separator techniques depending on the digestate type. In a broader perspective, this work contributes to the continuous improvement of biogas plants operations and to their role as nutrients recovery sites.

Lake sediments in Amazonia are a significant source of CH4, a potential greenhouse gas. Previous studies of sediments using C-13 analysis found that the contribution of hydrogenotrophic versus acetoclastic methanogenesis to CH4 production was relatively high. Here, we determined the methanogenic pathway in the same sediments (n = 6) by applying (14)Cbicarbonate or 2-(14)Cacetate and confirmed the high relative contribution (50 %-80 %) of hydrogenotrophic methanogenesis. The respiratory index (RI) of 2-(14)Cacetate, which is (CO2)-C-14 relative to (CH4)-C-14 +(CO2)-C-14, divided the sediments into two categories, i.e., those with an RI amp;lt; 0.2 consistent with the operation of acetoclastic methanogenesis and those with an RI amp;gt; 0.4 showing that a large percentage of the acetate-methyl was oxidized to CO2 rather than reduced to CH4. Hence, part of the acetate was probably converted to CO2 plus H-2 via syntrophic oxidation, thus enhancing hydrogenotrophic methanogenesis. This happened despite the presence of potentially acetoclastic Methanosaetaceae in all the sediments. Alternatively, acetate may have been oxidized with a constituent of the sediment organic matter (humic acid) serving as oxidant. Indeed, apparent acetate turnover rates were larger than CH4 production rates except in those sediments with a Ramp;lt;0.2. Our study demonstrates that CH4 production in Amazonian lake sediments was not simply caused by a combination of hydrogenotrophic and acetoclastic methanogenesis but probably involved additional acetate turnover.

This study examines CH4 and N2O fluxes during the dry season in two distinct areas of the Pantanal: Barranco Alto Farm (BAF), dominated by grasslands, and Passo da Lontra (PL), a forested region. As climate change increases the occurrence of droughts, understanding greenhouse gas (GHG) fluxes in tropical wetlands during dry periods is crucial. Using static chambers, CH4 and N2O emissions were measured from soils and tree stems in both regions, with additional measurements from grass in BAF. Contrary to expectations, PL-characterized by clayey soils-had sandy mud samples that retained less water, promoting oxic conditions and methane uptake, making it a CH4 sink. Meanwhile, BAF's sandy, well-drained soils exhibited minimal CH4 fluxes, with negligible methane uptake or emissions. N2O fluxes were generally higher in BAF, particularly from tree stems, indicating significant interactions between soil type, moisture, and vegetation. These findings highlight the pivotal roles of soil texture and aeration in GHG emissions, suggesting that well-drained, sandy soils in tropical wetlands may not always enhance methane oxidation. This underscores the importance of continuous GHG monitoring in the Pantanal to refine climate change mitigation strategies.

Biogas production via anaerobic digestion is an established and robust technology that produces energy and recycles nutrients. Several biotechnological attempts have been applied to this process to increase biogas production, including adding nanoparticles, but several discrepancies have been reported. To elucidate the contradictory results, we performed a literature review followed by a meta-analysis to evaluate the effect of adding natural nanoparticles to biogas sludge. Our results showed that adding nanoparticles can increase biogas production by up to two orders of magnitude. Considering that, we attribute these results to variability in the nanoparticles applied, leading to less reliable, consistent, and even contradictory results. We observed that the magnetite nanoparticles are the most tested ones with the most promising positive effects. In addition, we observed that concentrations of nanoparticles higher than 100 mg/L can have adverse effects, with an overall decrease in biogas production. The findings in this study highlight the need for a proper characterization of the nanomaterials type and concentration applied to the process to understand the interactions and effects on the microbial communities and dynamics that lead to an overall increase or decrease in biogas yield.

The polar regions have relatively low richness and diversity of plants and animals, and the basis of the entire ecological chain is supported by microbial diversity. In these regions, understanding the microbial response against environmental factors and anthropogenic disturbances is essential to understand patterns better, prevent isolated events, and apply biotechnology strategies. The Antarctic continent has been increasingly affected by anthropogenic contamination, and its constant temperature fluctuations limit the application of clean recovery strategies, such as bioremediation. We evaluated the bacterial response in oil-contaminated soil through a nutrient-amended microcosm experiment using two temperature regimes: (i) 4 degrees C and (ii) a freeze-thaw cycle (FTC) alternating between -20 and 4 degrees C. Bacterial taxa, such as Myxococcales, Chitinophagaceae, and Acidimicrobiales, were strongly related to the FTC. Rhodococcus was positively related to contaminated soils and further stimulated under FTC conditions. Additionally, the nutrient-amended treatment under the FTC regime enhanced bacterial groups with known biodegradation potential and was efficient in removing hydrocarbons of diesel oil. The experimental design, rates of bacterial succession, and level of hydrocarbon transformation can be considered as a baseline for further studies aimed at improving bioremediation strategies in environments affected by FTC regimes.

Production of organic matter by phototrophs requires inorganic carbon,which in aquatic systems is taken up from the water column, sediment oratmosphere. Observations on a microphytobenthic mat overlaid with 2 mm of waterand atmospheric air showed a tight balance between consumption and production ofoxygen and, therefore, a bimodal pattern in the Net Primary Production (NPP).Enrichment of the air with CO2 led to an enhancement of the NPP of a community,while the removal of all CO2 from the air resulted in no NPP and a linear O2 gradientfrom the overlying water to the lower part of the mat. The distribution and rates ofgross photosynthetic oxygen production, measured as the oxygen decline within oneto twos after light-dark shifts, showed little response to CO2 depletion, suggesting thatthe photosynthetic electron flow was primarily redirected from CO2 fixation tophotorespiration. In nature, the observed control of NPP by atmospheric CO2concentration should be most pronounced in shallow-water and intertidal systems,and the productivity in these ecosystems may therefore be steadily increasing alongwith the increase in atmospheric CO2 concentration. 

Soil moisture is among the most important factors regulating soil biodiversity and functioning. Models forecast changes in the precipitation regime in many areas of the planet, but how these changes will influence soil functioning, and how biotic drivers modulate such effects, is far from being understood. We evaluated the responses of C and N fluxes, and soil microbial properties to different soil water regimes in soils from the main three ecotypes of the worlds largest and most diverse tropical savanna. Further, we explored the direct and indirect effects of changes in the ecotype and soil water regimes on these key soil processes. Soils from the woodland savanna showed a better nutritional status than the other ecotypes, as well as higher potential N cycling rates, N2O emissions, and soil bacterial abundance but lower bacterial richness, whereas potential CO2 emissions and CH4 uptake peaked in the intermediate savanna. The ecotype also modulated the effects of changes in the soil water regime on nutrient cycling, greenhouse gas fluxes, and soil bacterial properties, with more intense responses in the intermediate savanna. Further, we highlight the existence of multiple contrasting direct and indirect (via soil microbes and abiotic properties) effects of an intensification of the precipitation regime on soil C- and N-related processes. Our results confirm that ecotype is a fundamental driver of soil properties and functioning in the Cerrado and that it can determine the responses of key soil processes to changes in the soil water regime.

Society is largely moving into electric mobility to achieve net -zero emissions, with the choice of electrification as the sole viable option for decarbonizing personal road transport. While this perspective has some merits, it overlooks the potential of biomethane produced through anaerobic digestion (AD) as a carbon -negative solution. Biomethane from AD offers not only carbon -neutrality but the possibility of being carbon -negative, with estimates suggesting it could provide 10 % of the world 's primary energy consumption by 2050. AD provides socio-environmental advantages, including improved quality of life and employment opportunities, a particularly relevant topic in developing countries. The technology is mature, cost-effective, and applicable across various sectors and therefore it is imperative that it is considered as an alternative or complementation to electrification of road transport.

Sediment denitrification rates seem to be lower in tropical environments than in temperate environments. Using the isotope pairing technique, we measured actual denitrification rates in the sediment of tropical coastal lagoons. To explain the low denitrification rates observed at all study sites (amp;lt;5 μmol N2 m-2 h-1 ), we also evaluated potential oxygen (O2 ) consumption, potential nitrification, potential denitrification, potential anammox, and estimated dissimilatory nitrate NO3 ) reduction to ammonium (NH4 + ; DNRA) in the sediment.15NO3 and 15NH4 + conversion was measured in oxic and anoxic slurries from the sediment surface. Sediment potential O2 consumption was used as a proxy for overall mineralization activity. Actual denitrification rates and different potential nitrogen (N) oxidation and reduction processes were significantly correlated with potential O2 consumption. The contribution of potential nitrification to total O2 consumption decreased from contributing 9% at sites with the lowest sediment mineralization rates to less than 0.1% at sites with the highest rates. -3 reduction switched completely from potential denitrification to estimated DNRA. Ammonium oxidation and nitrite NO2 ) reduction by potential anammox contributed up to 3% in sediments with the lowest sediment mineralization rates. The majority of these patterns could be explained by variations in the microbial environments from stable and largely oxic conditions at low sediment mineralization sites to more variable conditions and the prevalences of anaerobic microorganisms at high sediment mineralization sites. Furthermore, the presence of algal and microbial mats on the sediment had a significant effect on all studied processes. We propose a theoretical model based on low and high sediment mineralization rates to explain the growth, activity, and distribution of microorganisms carrying out denitrification and DNRA in sediments that can explain the dominance or coexistence of DNRA and denitrification processes. The results presented here show that the potential activity of anaerobic nitrate-reducing organisms is not dependent on the availability of environmental NO3. © 2016 Enrich-Prast et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Sediment denitrification was monthly evaluated in two tropical coastal lagoons with different trophic states using the N-15 isotope pairing technique. Denitrification rates were very low in both environments, always < 5.0 mu mol N-2 m(-2) h(-1) and were not significantly different between them. Oxygen consumption varied from 426 to 4248 mu mol O-2 m(-2) h(-1) and was generally three times higher in the meso-eutrophic than the oligotrophic lagoon. The low denitrification activity was ascribed to both low water NO3- concentrations (< 2.0 mu M) and little nitrate supply from nitrification. There was no correlation of denitrification with nitrate or ammonium fluxes. Sediments in temperate environments with similar oxygen consumption rates usually presented a higher proportion of nitrification-denitrification rates. Sediment oxygen consumption was a good predictor of sediment denitrification in both studied lagoons.

As a result of rapid development in China and the growth of megacities, large amounts of organic wastes are generated within relatively small areas. Part of these wastes can be used to produce biogas, not only to reduce waste-related problems, but also to provide renewable energy, recycle nutrients, and lower greenhouse gases and air polluting emissions. This article is focused on the conditions for biogas solutions in Guangzhou. It is based on a transdisciplinary project that integrates several approaches, for example, literature studies and lab analysis of food waste to estimate the food waste potential, interviews to learn about the socio-technical context and conditions, and life-cycle assessment to investigate the performance of different waste management scenarios involving biogas production. Xiaoguwei Island, with a population of about 250,000 people, was chosen as the area of study. The results show that there are significant food waste potentials on the island, and that all studied scenarios could contribute to a net reduction of greenhouse gas emissions. Several socio-technical barriers were identified, but it is expected that the forthcoming regulatory changes help to overcome some of them.

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Phosphorus is a key macronutrient inmacroalgal physiology, including carbohydrate anabolism. To determine the effects of phosphorus on different physiological parameters, we cultivated Ulva fasciata specimens from distinct localities (upwelling and non-upwelling sites) in the presence of different phosphate concentrations (0, 2, and 4 mu MPO43-). After 15 days, growth rates were similar (approx. 12% day(-1)) and carbohydrate contents had increased in individuals fromboth sites. In individuals from the upwelling site, carbohydrate contents were high in all treatments (71% dry mass), whereas non-upwelling site individuals cultivated under the highest phosphate concentration showed the lowest carbohydrate content (46% DM). Nevertheless, we observed higher rates of phosphorus uptake in individuals from the non-upwelling site cultivated under the highest phosphate concentration, indicating a stress response to elevated nutrient concentrations. Individuals from both sites cultivated with phosphate maintained healthy photosystems over the experimental period (F-v/ F-m = 0.788), whereas those cultivated in the absence of phosphate showed evidence of photosystem impairment, as indicated by a progressive decline in maximum quantum yield. Altogether, our results indicate that site origin and phosphate concentration influence the carbohydrate content in U. fasciata and that individuals from sites with broad environmental variation, such as upwelling events, can show higher productivity.

We investigated the pathways of gross soil nitrogen (N) transformations and nitrous oxide (N2O) production with N-15 enrichment techniques in a boreal forest landscape by comparing organic (riparian) and mineral (upland) soil within two catchments in northern Sweden. The values of all soil properties evaluated for the riparin and upland zones were statistically different (Pamp;lt;0.05). The rates of gross N transformation were larger in the riparian than in the upland soil (Pamp;lt;0.05), which can be explained by the larger soil organic matter (SOM) content that provides energy and mineral N as a substrate for other processes. The riparian soil at one site shows a decoupling of nitrification from mineralization; the largest gross mineralization occurred in the soil at this site, but gross nitrification was relatively small. This was probably because of the low pH (2.70.1), which inhibits the activity of autotrophic nitrifiers. Oxidation of organic N was the main source of N2O in the soil at all sites, probably because of low soil pH and large organic carbon content, which favours heterotrophic nitrification. The results of our study confirm that organic matter is the main regulating factor for gross N mineralization and nitrification; the latter are markedly different in the organic-rich riparian soil and the upland soil in the boreal forest landscape.

Extensive regions of tropical forests are subjected to high rates of deforestation and forest regrowth and both are strongly affect soil nutrient cycling. Nitrogen (N) dynamics changes during forest regrowth and the recovery of forests and functioning similar to pristine conditions depends on sufficient N availability. We show that, in a chronosequence of Amazonian forests, gross nitrification and, as a result, nitrate-to-ammonium (NO3- : NH4+) ratio were lower in all stages of regrowing forests (10 to 40 years) compared to pristine forest. This indicates the evolution of a more conservative and closed N cycle with reduced risk for N leaking out of the ecosystem in regrowing forests. Furthermore, our results indicate that mineralization and nitrification are decoupled in young regrowing forests (10 years), such as that high gross mineralization is accompanied by low gross nitrification, demonstrating a closed N cycle that at the same time maintains N supply for forest regrowth. We conclude that the status of gross nitrification in disturbed soil is a key process to understand the mechanisms of and time needed for tropical forest recovery.

Methane is an important greenhouse gas1, but the role of trees in the methane budget remains uncertain2. Although it has been shown that wetland and some upland trees can emit soil-derived methane at the stem base3,4, it has also been suggested that upland trees can serve as a net sink for atmospheric methane5,6. Here we examine in situ woody surface methane exchange of upland tropical, temperate and boreal forest trees. We find that methane uptake on woody surfaces, in particular at and above about 2 m above the forest floor, can dominate the net ecosystem contribution of trees, resulting in a net tree methane sink. Stable carbon isotope measurement of methane in woody surface chamber air and process-level investigations on extracted wood cores are consistent with methanotrophy, suggesting a microbially mediated drawdown of methane on and in tree woody surfaces and tissues. By applying terrestrial laser scanning-derived allometry to quantify global forest tree woody surface area, a preliminary first estimate suggests that trees may contribute 24.6-49.9 Tg of atmospheric methane uptake globally. Our findings indicate that the climate benefits of tropical and temperate forest protection and reforestation may be greater than previously assumed. Studies of in situ woody surface methane exchange in upland tropical, temperate and boreal forest trees find that methane uptake can result in a net tree methane sink that is globally significant and demonstrates an additional climate benefit provided by trees.

Carbon dioxide (CO2) emissions to the atmosphere from running waters are estimated to be four times greater than the total carbon (C) flux to the oceans. However, these fluxes remain poorly constrained because of substantial spatial and temporal variability in dissolved CO2 concentrations. Using a global compilation of high-frequency CO2 measurements, we demonstrate that nocturnal CO2 emissions are on average 27% (0.9 gC m(-2) d(-1)) greater than those estimated from diurnal concentrations alone. Constraints on light availability due to canopy shading or water colour are the principal controls on observed diel (24 hour) variation, suggesting this nocturnal increase arises from daytime fixation of CO2 by photosynthesis. Because current global estimates of CO2 emissions to the atmosphere from running waters (0.65-1.8 PgC yr(-1)) rely primarily on discrete measurements of dissolved CO2 obtained during the day, they substantially underestimate the magnitude of this flux. Accounting for night-time CO2 emissions may elevate global estimates from running waters to the atmosphere by 0.20-0.55 PgC yr(-1). Failing to account for emission differences between day and night will lead to an underestimate of global CO2 emissions from rivers by up to 0.55 PgC yr(-1), according to analyses of high-frequency CO2 measurements.

Regions in the Amazon Basin have been associated with specific biogeochemical processes, but a detailed chemical classification of the abundant and ubiquitous dissolved organic matter (DOM), beyond specific indicator compounds and bulk measurements, has not yet been established. We sampled water from different locations in the Negro, Madeira/Jamari and Tapajos River areas to characterize the molecular DOM composition and distribution. Ultrahigh-resolution Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR-MS) combined with excitation emission matrix (EEM) fluorescence spectroscopy and parallel factor analysis (PARAFAC) revealed a large proportion of ubiquitous DOM but also unique area-specific molecular signatures. Unique to the DOM of the Rio Negro area was the large abundance of high molecular weight, diverse hydrogen-deficient and highly oxidized molecular ions deviating from known lignin or tannin compositions, indicating substantial oxidative processing of these ultimately plant-derived polyphenols indicative of these black waters. In contrast, unique signatures in the Madeira/Jamari area were defined by presumably labile sulfur-and nitrogen-containing molecules in this white water river system. Waters from the Tapajos main stem did not show any substantial unique molecular signatures relative to those present in the Rio Madeira and Rio Negro, which implied a lower organic molecular complexity in this clear water tributary, even after mixing with the main stem of the Amazon River. Beside ubiquitous DOM at average H / C and O / C elemental ratios, a distinct and significant unique DOM pool prevailed in the black, white and clear water areas that were also highly correlated with EEM-PARAFAC components and define the frameworks for primary production and other aspects of aquatic life.

Endocrine-disrupting compounds (EDCs) are a group of emergent pollutants that affect the endocrine system. EDCs can cause harm to humans and animals and unbalance the aquatic ecosystem even at low concentrations. Several methods are applied to remove EDCs, and recently, magnetic nanoparticles (MNPs), a low-cost and magnetically-responsive approach, have been introduced as modern innovative tools for this purpose. Thus, we conducted a systematic analysis to determine the characteristics of MNPs required to optimize EDCs removal in water/waste treatments. Most studies used magnetite (Fe3O4) nanoparticles, a low-cost and easily acquired material, followed by other metallic oxides nanoparticles (MOPs) like zinc, copper, and nickel oxides. Short adsorption time (0.5-15 min) and small MNP (10-80 nm) were the most prominent and successful in EDCs recovery approaches. After analyzing data published in the last decade, results showed that, in general, processes that apply lower concentrations of MNP seem to achieve a significant higher removal rate. For instance, MNPs formulations are able to successfully remove >90% of bisphenols and phthalates. However, depending on the EDCs type, the concentration of MNPs have to be adjusted to increase EDCs recovery rates, possibly due to their different chemical compositions and properties. Our results indicate that MNPs are an efficient, with potential to be a relatively cheap way to extract or eliminate EDCs from wastewater and should be considered an innovative tool to be included in waste treatment protocols.

The floodplain of the Amazon River is a large source for the greenhouse gas methane, but the soil microbial communities and processes involved are little known. We studied the structure and function of the methanogenic microbial communities in soils across different inundation regimes in the Cunia Reserve, encompassing nonflooded forest soil (dry forest), occasionally flooded Igapo soils (dry Igapo), long time flooded Igapo soils (wet Igapo) and sediments from Igarape streams (Igarape). We also investigated a Transect (four sites) from the water shoreline into the dry forest. The potential and resilience of the CH4 production process were studied in the original soil samples upon anaerobic incubation and again after artificial desiccation and rewetting. Bacterial and archaeal 16S rRNA genes and methanogenic mcrA were always present in the soils, except in dry forest soils where mcrA increased only upon anaerobic incubation. NMDS analysis showed a clear effect of desiccation and rewetting treatments on both bacterial and archaeal communities. However, the effects of the different sites were less pronounced, with the exception of Igarape. After anaerobic incubation, methanogenic taxa became more abundant among the Archaea, while there was only little change among the Bacteria. Contribution of hydrogenotrophic methanogenesis was usually around 40%. After desiccation and rewetting, we found that Firmicutes, Methanocellales and Methanosarcinaceae became the dominant taxa, but rates and pathways of CH4 production stayed similar. Such change was also observed in soils from the Transects. The results indicate that microbial community structures of Amazonian soils will in general be strongly affected by flooding and drainage events, while differences between specific field sites will be comparatively minor.

Tropical lake sediments are a significant source for the greenhouse gas methane. We studied function (pathway, rate) and structure (abundance, taxonomic composition) of the microbial communities (Bacteria, Archaea) leading to methane formation together with the main physicochemical characteristics in the sediments of four clear water, six white water and three black water lakes of the Amazon River system. Concentrations of sulfate and ferric iron, pH and delta C-13 of organic carbon were usually higher, while concentrations of carbon, nitrogen and rates of CH4 production were generally lower in white water versus clear water or black water sediments. Copy numbers of bacterial and especially archaeal ribosomal RNA genes also tended to be relatively lower in white water sediments. Hydrogenotrophic methanogenesis contributed 58+/-16% to total CH4 production in all systems. Network analysis identified six communities, of which four were comprised mostly of bacteria found in all sediment types, while two were mostly in clear water sediment. Terminal restriction fragment length polymorphism (T-RFLP) and pyrosequencing showed that the compositions of the communities differed between the different sediment systems, statistically related to the particular physicochemical conditions and to CH4 production rates. Among the archaea, clear water, white water, and black water sediments contained relatively more Methanomicrobiales, Methanosarcinaceae and Methanocellales, respectively, while Methanosaetaceae were common in all systems. Proteobacteria, Deltaproteobacteria (Myxococcales, Syntrophobacterales, sulfate reducers) in particular, Acidobacteria and Firmicutes were the most abundant bacterial phyla in all sediment systems. Among the other important bacterial phyla, clear water sediments contained relatively more Alphaproteobacteria and Planctomycetes, whereas white water sediments contained relatively more Betaproteobacteria, Firmicutes, Actinobacteria, and Chloroflexi than the respective other sediment systems. The data showed communities of bacteria common to all sediment types, but also revealed microbial groups that were significantly different between the sediment types, which also differed in physicochemical conditions. Our study showed that function of the microbial communities may be understood on the basis of their structures, which in turn are determined by environmental heterogeneity.

Natural lakes and reservoirs are important, yet not well constrained sources of greenhouse gasses to the atmosphere. In particular for N2O emissions, a huge variability is observed in the few, observation‐driven flux estimates that have been published so far. Recently, a process‐based, spatially explicit model has been used to estimate global N2O emissions from more than 6,000 reservoirs based on nitrogen (N) and phosphorous inflows and water residence time. Here, we extend the model to a dataset of 1.4 million standing water bodies comprising natural lakes and reservoirs. For validation, we normalized the simulated N2O emissions by the surface area of each water body and compared them against regional averages of N2O emission rates taken from the literature or estimated based on observed N2O concentrations. We estimate that natural lakes and reservoirs together emit 4.5±2.9 Gmol N2O‐N yr‐1 globally. Our global scale estimate falls in the far lower end of existing, observation‐driven estimates. Natural lakes contribute only about half of this flux, although they contribute 91% of the total surface area of standing water bodies. Hence, the mean N2O emission rates per surface area are substantially lower for natural lakes than for reservoirs with 0.8±0.5 mmol N m‐2yr‐1 vs. 9.6±6.0 mmol N m‐2yr‐1, respectively. This finding can be explained by on average lower external N inputs to natural lakes. We conclude that upscaling based estimates, which do not distinguish natural lakes from reservoirs, are prone to important biases.

Dissolved organic matter (DOM) is one of the most complex, dynamic and abundant sources of organic carbon, but its chemical reactivity remains uncertain 1-3 . Greater insights into DOM structural features could facilitate understanding its synthesis, turnover and processing in the global carbon cycle 4,5 . Here we use complementary multiplicity-edited 13C nuclear magnetic resonance (NMR) spectra to quantify key substructures assembling the carbon skeletons of DOM from four main Amazon rivers and two mid-size Swedish boreal lakes. We find that one type of reaction mechanism, oxidative dearomatization (ODA), widely used in organic synthetic chemistry to create natural product scaffolds 6-10 , is probably a key driver for generating structural diversity during processing of DOM that are rich in suitable polyphenolic precursor molecules. Our data suggest a high abundance of tetrahedral quaternary carbons bound to one oxygen and three carbon atoms (OCqC3 units). These units are rare in common biomolecules but could be readily produced by ODA of lignin-derived and tannin-derived polyphenols. Tautomerization of (poly)phenols by ODA creates non-planar cyclohexadienones, which are subject to immediate and parallel cycloadditions. This combination leads to a proliferation of structural diversity of DOM compounds from early stages of DOM processing, with an increase in oxygenated aliphatic structures. Overall, we propose that ODA is a key reaction mechanism for complexity acceleration in the processing of DOM molecules, creation of new oxygenated aliphatic molecules and that it could be prevalent in nature. Using complementary multiplicity-edited 13C nuclear magnetic resonance spectra, oxidative dearomatization is shown to be a key driver for generating structural diversity during processing of dissolved organic matter and the data also suggest high abundance of OCqC3 units.

Rivers are natural biogeochemical systems shaping the fates of dissolved organic matter (DOM) from leaving soils to reaching the oceans. This study focuses on Amazon basin DOM processing employing negative and positive electro-spray ionization Fourier transform ion cyclotron resonance mass spectrometry (ESI[+/-] FT-ICR MS) and nuclear mag-netic resonance spectroscopy (NMR) to reveal effects of major processes on the compositional space and structural characteristics of black, white and clear water systems. These include non-conservative mixing at the confluences of (1) Solimoes and the Negro River, (2) the Amazon River and the Madeira River, and (3) in-stream processing of Amazon River DOM between the Madeira River and the Tapajos River. The Negro River (black water) supplies more highly oxygenated and high molecular weight compounds, whereas the Solimoes and Madeira Rivers (white water) contribute more CHNO and CHOS molecules to the Amazon River main stem. Aliphatic CHO and abundant CHNO compounds prevail in Tapajos River DOM (clear water), likely originating from primary production. Sorption onto particles and heterotrophic microbial degradation are probably the principal mechanisms for the observed changes in DOM composition in the Amazon River and its tributaries.

Positive and negative electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry and H-1 NMR revealed major compositional and structural changes of dissolved organic matter (DOM) after mixing two sets of river waters in Amazon confluences: the Solimoes and Negro Rivers (S + N) and the Amazon and Tapajo s Rivers (A + T). We also studied the effects of water mixing ratios and incubation time on the composition and structure of DOM molecules. NMR spectra demonstrated large-scale structural transformations in the case of S + N mixing, with gain of pure and functionalized aliphatic units and loss of all other structures after 1d incubation. A + T mixing resulted in comparatively minor structural alterations, with a major gain of small aliphatic biomolecular binding motifs. Remarkably, structural alterations from mixing to 1d incubation were in essence reversed from 1d to 5d incubation for both S + N and A + T mixing experiments. Heterotrophic bacterial production (HBP) in endmembers S, N, and S + N mixtures remained near 0.03 mu gC L-1 h(-1), whereas HBP in A, T, and A + T were about five times higher. High rates of dark carbon fixation took place at S + N mixing in particular. In-depth biogeochemical characterization revealed major distinctions between DOM biogeochemical changes and temporal evolution at these key confluence sites within the Amazon basin.

Biomass burning in the Brazilian Amazon is modulated by climate factors, such as droughts, and by human factors, such as deforestation, and land management activities. The increase in forest fires during drought years has led to the hypothesis that fire activity decoupled from deforestation during the twenty-first century. However, assessment of the hypothesis relied on an incorrect active fire dataset, which led to an underestimation of the decreasing trend in fire activity and to an inflated rank for year 2015 in terms of active fire counts. The recent correction of that database warrants a reassessment of the relationships between deforestation and fire. Contrasting with earlier findings, we show that the exacerbating effect of drought on fire season severity did not increase from 2003 to 2015 and that the record-breaking dry conditions of 2015 had the least impact on fire season of all twenty-first century severe droughts. Overall, our results for the same period used in the study that originated the fire-deforestation decoupling hypothesis (2003-2015) show that decoupling was clearly weaker than initially proposed. Extension of the study period up to 2019, and novel analysis of trends in fire types and fire intensity strengthened this conclusion. Therefore, the role of deforestation as a driver of fire activity in the region should not be underestimated and must be taken into account when implementing measures to protect the Amazon forest.

Natural environments with frequent drainage experience drying and rewetting events that impose fluctuations in water availability and oxygen exposure. These relatively dramatic cycles profoundly impact microbial activity in the environment and subsequent emissions of methane and carbon dioxide. In this study, we mimicked drying and rewetting events by submitting methanogenic communities from strictly anaerobic environments (anaerobic digestors) with different phylogenetic structures to consecutive desiccation events under aerobic (air) and anaerobic (nitrogen) conditions followed by rewetting. We showed that methane production quickly recovered after each rewetting, and surprisingly, no significant difference was observed between the effects of the aerobic or anaerobic desiccation events. There was a slight change in the microbial community structure and a decrease in methane production rates after consecutive drying and rewetting, which can be attributed to a depletion of the pool of available organic matter or the inhibition of the methanogenic communities. These observations indicate that in comparison to the drying and rewetting events or oxygen exposure, the initial phylogenetic structure and the organic matter quantity and quality exhibited a stronger influence on the methanogenic communities and overall microbial community responses. These results change the current paradigm of the sensitivity of strict anaerobic microorganisms to oxygen exposure.

Headwater streams are often characterized by turbulence, organic matter inputs from terrestrial systems, net heterotrophy, and the microbial loop supplying carbon and energy for consumers. However, ecological models overlook dark carbon fixation (DCF), the light-independent inorganic carbon uptake, mainly based on chemosynthesis, using energy yields from redox reactions. The quantification of microbial biomass production, including DCF, heterotrophic production (HP), gross primary production (GPP), and ecosystem respiration (ER) in lotic aquatic systems, has long yet to be addressed. Here, we investigate HP and DCF in water, sediment, and litter in addition to GPP and ER from streams in pristine rainforests in three distinct sub-basins of the Amazon River, assessing the variety of turbid, black, and clear waters. We observed mean (min-max) values of microbial biomass production of about 0.1 (0.02-1.2), 3.2 (0.8-14.1), and 0.1 (0.02-0.5) mg C m-2 h-1 in water, sediment, and litter samples, in which DCF : HP showed mean (min-max) values of 0.5 (0.2-2), 0.02 (0.001-0.07), and 0.2 (0.001-0.5). Hence, measurements yielded DCF of similar magnitude as HP in water and litter but significantly lower in sediment, indicating that DCF supplied more carbon to planktonic and litter microbes than in top sediments of streams. Literature comparisons show similar DCF and GPP, both being lower than ER in streams. Finally, we found stream DCF higher than in lentic systems, suggesting that flow and turbulence may accelerate chemosynthesis.