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Nilsson, Emma
Publications (4 of 4) Show all publications
Sharma, M., Nilsson, E., Falk, M., Masood, T. B., Jollans, L., Persson, A., . . . Hotz, I. (2025). Topology-Aware Volume Fusion for Spectral Computed Tomography via Histograms and Extremum Graph. In: 2025 IEEE Workshop on Topological Data Analysis and Visualization (TopoInVis): . Paper presented at IEEE Workshop on Topological Data Analysis and Visualization (TopoInVis), 02-03 November 2025, Vienna, Austria (pp. 53-62). Institute of Electrical and Electronics Engineers (IEEE)
Open this publication in new window or tab >>Topology-Aware Volume Fusion for Spectral Computed Tomography via Histograms and Extremum Graph
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2025 (English)In: 2025 IEEE Workshop on Topological Data Analysis and Visualization (TopoInVis), Institute of Electrical and Electronics Engineers (IEEE) , 2025, p. 53-62Conference paper, Published paper (Refereed)
Abstract [en]

Photon-Counting Computed Tomography (PCCT) is a novel imaging modality that simultaneously acquires volumetric data at multiple X-ray energy levels, generating separate volumes that capture energy-dependent attenuation properties. Attenuation refers to the reduction in X-ray intensity as it passes through different tissues or materials, which depends on their density and atomic composition. This spectral information enhances tissue and material differentiation, enabling more accurate diagnosis and analysis. However, the resulting multivolume datasets are often complex and redundant, making visualization and interpretation challenging. To address these challenges, we propose a method for fusing spectral PCCT data into a single representative volume that enables direct volume rendering and segmentation by leveraging both shared and complementary information across different channels. Our approach starts by computing 2D histograms between pairs of volumes to identify those that exhibit prominent structural features. These histograms reveal relationships and variations that may be difficult to discern from individual volumes alone. Next, we construct an extremum graph from the 2D histogram of two minimally correlated yet complementary volumes—selected to capture both shared and distinct features—thereby maximizing the information content. The graph captures the topological distribution of histogram extrema. By extracting prominent structure within this graph and projecting each grid point in histogram space onto it, we reduce the dimensionality to one, producing a unified volume. This representative volume retains key structural and material characteristics from the original spectral data while significantly reducing the analysis scope from multiple volumes to one. The result is a topology-aware, information-rich fusion of multi-energy CT datasets that facilitates more effective visualization and segmentation.

Place, publisher, year, edition, pages
Institute of Electrical and Electronics Engineers (IEEE), 2025
Keywords
Multi-spectral CT, extremum graph, volume rendering, medical image segmentation, multidimensional transfer function, Computed tomography, Pipelines, Data visualization, Feature extraction
National Category
Computer graphics and computer vision Human Computer Interaction Radiology and Medical Imaging Medical Imaging
Identifiers
urn:nbn:se:liu:diva-221905 (URN)10.1109/TopoInVis68599.2025.00010 (DOI)001720170800006 ()2-s2.0-105032093960 (Scopus ID)9798331579920 (ISBN)9798331579937 (ISBN)
Conference
IEEE Workshop on Topological Data Analysis and Visualization (TopoInVis), 02-03 November 2025, Vienna, Austria
Funder
Swedish Research Council, 2023-04806Swedish Research Council, 2019-05487Wallenberg AI, Autonomous Systems and Software Program (WASP)Swedish e‐Science Research Center
Available from: 2026-03-16 Created: 2026-03-16 Last updated: 2026-04-14
Nilsson, E., Lukasczyk, J., Masood, T. B., Garth, C. & Hotz, I. (2023). Probabilistic Gradient-Based Extrema Tracking. In: 2023 Topological Data Analysis and Visualization (TopoInVis): . Paper presented at IEEE Workshop on Topological Data Analysis and Visualization (TopoInVis), Melbourne, Oct 22, 2023 (pp. 72-81). IEEE
Open this publication in new window or tab >>Probabilistic Gradient-Based Extrema Tracking
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2023 (English)In: 2023 Topological Data Analysis and Visualization (TopoInVis), IEEE, 2023, p. 72-81Conference paper, Published paper (Refereed)
Abstract [en]

Feature tracking is a common task in visualization applications, where methods based on topological data analysis (TDA) have successfully been applied in the past for feature definition as well as tracking. In this work, we focus on tracking extrema of temporal scalar fields. A family of TDA approaches address this task by establishing one-to-one correspondences between extrema based on discrete gradient vector fields. More specifically, two extrema of subsequent time steps are matched if they fall into their respective ascending and descending manifolds. However, due to this one-to-one assignment, these approaches are prone to fail where, e.g., extrema are located in regions with low gradient magnitude, or are located close to boundaries of the manifolds. Therefore, we propose a probabilistic matching that captures a larger set of possible correspondences via neighborhood sampling, or by computing the overlap of the manifolds. We illustrate the usefulness of the approach with two application cases.

Place, publisher, year, edition, pages
IEEE, 2023
Keywords
Feature tracking, Manifolds, Data analysis, Data visualization, Task analysis
National Category
Computer Sciences Human Computer Interaction
Identifiers
urn:nbn:se:liu:diva-208064 (URN)10.1109/TopoInVis60193.2023.00014 (DOI)979-8-3503-2964-3 (ISBN)979-8-3503-2965-0 (ISBN)
Conference
IEEE Workshop on Topological Data Analysis and Visualization (TopoInVis), Melbourne, Oct 22, 2023
Funder
Swedish e‐Science Research CenterELLIIT - The Linköping‐Lund Initiative on IT and Mobile CommunicationsSwedish Research Council, 2019-05487
Note

This work is supported by SeRC (Swedish e-Science Research Center), ELLIIT environment for strategic research in Sweden, and the Swedish Research Council (VR) grant 2019-05487.

Available from: 2024-10-01 Created: 2024-10-01 Last updated: 2025-11-17
Nilsson, E., Lukasczyk, J., Engelke, W., Masood, T. B., Svensson, G., Caballero, R., . . . Hotz, I. (2022). Exploring Cyclone Evolution with Hierarchical Features. In: 2022 IEEE WORKSHOP ON TOPOLOGICAL DATA ANALYSIS AND VISUALIZATION (TOPOINVIS 2022): . Paper presented at IEEE VIS Workshop on Topological Data Analysis and Visualization (TopoInVis), Oklahoma City, OK, oct 17, 2022 (pp. 92-102). IEEE
Open this publication in new window or tab >>Exploring Cyclone Evolution with Hierarchical Features
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2022 (English)In: 2022 IEEE WORKSHOP ON TOPOLOGICAL DATA ANALYSIS AND VISUALIZATION (TOPOINVIS 2022), IEEE , 2022, p. 92-102Conference paper, Published paper (Refereed)
Abstract [en]

The problem of tracking and visualizing cyclones is still an active area of climate research, since the nature of cyclones varies depending on geospatial location and temporal season, resulting in no clear mathematical definition. Thus, many cyclone tracking methods are tailored to specific datasets and therefore do not support general cyclone extraction across the globe. To address this challenge, we present a conceptual application for exploring cyclone evolution by organizing the extracted cyclone tracks into hierarchical groups. Our approach is based on extrema tracking, and the resulting tracks can be defined in a multi-scale structure by grouping the points based on a novel feature descriptor defined on the merge tree, so-called crown features. Consequently, multiple parameter settings can be visualized and explored in a level-of-detail approach, supporting experts to quickly gain insights on cyclonic formation and evolution. We describe a general cyclone exploration pipeline that consists of four modular building blocks: (1) an extrema tracking method, (2) multiple definitions of cyclones as groups of extrema, including crown features, (3) the correlation of cyclones based on the underlying tracking information, and (4) a hierarchical visualization of the resulting feature tracks and their spatial embedding, allowing exploration on a global and local scale. In order to be as flexible as possible, our pipeline allows for exchanging every module with different techniques, such as other tracking methods and cyclone definitions.

Place, publisher, year, edition, pages
IEEE, 2022
Keywords
Human-centered computing; Visualization; Visualization design and evaluation methods; Human-centered computing; Visualization; Visualization application domains; Scientific visualization
National Category
Computer graphics and computer vision
Identifiers
urn:nbn:se:liu:diva-191881 (URN)10.1109/TopoInVis57755.2022.00016 (DOI)000913326500010 ()9781665493543 (ISBN)9781665493550 (ISBN)
Conference
IEEE VIS Workshop on Topological Data Analysis and Visualization (TopoInVis), Oklahoma City, OK, oct 17, 2022
Funder
Swedish e‐Science Research CenterELLIIT - The Linköping‐Lund Initiative on IT and Mobile CommunicationsSwedish Research Council, 2019-05487
Note

Funding Agencies|SeRC (Swedish e-Science Research Center); ELLIIT environment for strategic research in Sweden; Swedish Research Council (VR) [2019-05487]

Available from: 2023-02-22 Created: 2023-02-22 Last updated: 2026-08-13
Nilsson, E., Lukasczyk, J., Masood, T. B., Garth, C. & Hotz, I. (2022). Towards Benchmark Data Generation for Feature Tracking in Scalar Fields. In: 2022 IEEE WORKSHOP ON TOPOLOGICAL DATA ANALYSIS AND VISUALIZATION (TOPOINVIS 2022): . Paper presented at IEEE VIS Workshop on Topological Data Analysis and Visualization (TopoInVis), Oklahoma City, OK, oct 17, 2022 (pp. 103-112). IEEE
Open this publication in new window or tab >>Towards Benchmark Data Generation for Feature Tracking in Scalar Fields
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2022 (English)In: 2022 IEEE WORKSHOP ON TOPOLOGICAL DATA ANALYSIS AND VISUALIZATION (TOPOINVIS 2022), IEEE , 2022, p. 103-112Conference paper, Published paper (Refereed)
Abstract [en]

We describe a benchmark data generator for tracking methods for two- and three-dimensional time-dependent scalar fields. More and more topology-based tracking methods are presented in the visualization community, but the validation and evaluation of the tracking results are currently limited to qualitative visual approaches. We present a pipeline for creating different ground truth features that support evaluating tracking methods based on quantitative measures. In short, our approach randomly simulates a temporal point cloud with birth, death, split, merge, and continuation events, where the points are then used to derive a scalar field whose topological features correspond to the points. These scalar fields can be used as the input for different tracking methods, where the computed tracks can be compared against the ground truth feature evolution. This approach facilitates directly comparing the results of different tracking methods, independent of the initial feature characterization.

Place, publisher, year, edition, pages
IEEE, 2022
Keywords
Human-centered computing; Visualization; Visualization design and evaluation methods; Human-centered computing; Visualization; Visualization application domains; Scientific visualization
National Category
Computer graphics and computer vision
Identifiers
urn:nbn:se:liu:diva-191882 (URN)10.1109/TopoInVis57755.2022.00017 (DOI)000913326500011 ()9781665493543 (ISBN)9781665493550 (ISBN)
Conference
IEEE VIS Workshop on Topological Data Analysis and Visualization (TopoInVis), Oklahoma City, OK, oct 17, 2022
Funder
Swedish e‐Science Research CenterELLIIT - The Linköping‐Lund Initiative on IT and Mobile CommunicationsSwedish Research Council, 2019-05487
Note

Funding Agencies|SeRC (Swedish e-Science Research Center); ELLIIT environment for strategic research in Sweden; Swedish Research Council (VR) [2019-05487]

Available from: 2023-02-22 Created: 2023-02-22 Last updated: 2026-08-13
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