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Eilertsen, G., Jönsson, D., Unger, J. & Ynnerman, A. (2024). Model-invariant Weight Distribution Descriptors for Visual Exploration of Neural Networks en Masse. In: Christian Tominski, Manuela Waldner, and Bei Wang (Ed.), EuroVis 2024 - Short Papers: . Paper presented at EuroVis. Eurographics - European Association for Computer Graphics
Open this publication in new window or tab >>Model-invariant Weight Distribution Descriptors for Visual Exploration of Neural Networks en Masse
2024 (English)In: EuroVis 2024 - Short Papers / [ed] Christian Tominski, Manuela Waldner, and Bei Wang, Eurographics - European Association for Computer Graphics, 2024Conference paper, Published paper (Refereed)
Abstract [en]

We present a neural network representation which can be used for visually analyzing the similarities and differences in a large corpus of trained neural networks. The focus is on architecture-invariant comparisons based on network weights, estimating similarities of the statistical footprints encoded by the training setups and stochastic optimization procedures. To make this possible, we propose a novel visual descriptor of neural network weights. The visual descriptor considers local weight statistics in a model-agnostic manner by encoding the distribution of weights over different model depths. We show how such a representation can extract descriptive information, is robust to different parameterizations of a model, and is applicable to different architecture specifications. The descriptor is used to create a model atlas by projecting a model library to a 2D representation, where clusters can be found based on similar weight properties. A cluster analysis strategy makes it possible to understand the weight properties of clusters and how these connect to the different datasets and hyper-parameters used to train the models.

Place, publisher, year, edition, pages
Eurographics - European Association for Computer Graphics, 2024
Keywords
machine learning, deep learning, visualization
National Category
Computer and Information Sciences Computer and Information Sciences
Identifiers
urn:nbn:se:liu:diva-205660 (URN)10.2312/evs.20241068 (DOI)978-3-03868-251-6 (ISBN)
Conference
EuroVis
Funder
Wallenberg AI, Autonomous Systems and Software Program (WASP)
Available from: 2024-06-28 Created: 2024-06-28 Last updated: 2025-08-20
Knutsson, A., Unnebäck, J., Jönsson, D. & Eilertsen, G. (2023). CDF-Based Importance Sampling and Visualization for Neural Network Training. In: Thomas Höllt and Daniel Jönsson (Ed.), Eurographics Workshop on Visual Computing for Biology and Medicine: . Paper presented at VCBM 2023: Eurographics Workshop on Visual Computing for Biology and Medicine, Norrköping, Sweden, September 20 – 22, 2023.
Open this publication in new window or tab >>CDF-Based Importance Sampling and Visualization for Neural Network Training
2023 (English)In: Eurographics Workshop on Visual Computing for Biology and Medicine / [ed] Thomas Höllt and Daniel Jönsson, 2023Conference paper, Published paper (Refereed)
Abstract [en]

Training a deep neural network is computationally expensive, but achieving the same network performance with less computation is possible if the training data is carefully chosen. However, selecting input samples during training is challenging as their true importance for the optimization is unknown. Furthermore, evaluation of the importance of individual samples must be computationally efficient and unbiased. In this paper, we present a new input data importance sampling strategy for reducing the training time of deep neural networks. We investigate different importance metrics that can be efficiently retrieved as they are available during training, i.e., the training loss and gradient norm. We found that choosing only samples with large loss or gradient norm, which are hard for the network to learn, is not optimal for the network performance. Instead, we introduce an importance sampling strategy that selects samples based on the cumulative distribution function of the loss and gradient norm, thereby making it more likely to choose hard samples while still including easy ones. The behavior of the proposed strategy is first analyzed on a synthetic dataset, and then evaluated in the application of classification of malignant cancer in digital pathology image patches. As pathology images contain many repetitive patterns, there could be significant gains in focusing on features that contribute stronger to the optimization. Finally, we show how the importance sampling process can be used to gain insights about the input data through visualization of samples that are found most or least useful for the training.

Series
Eurographics Workshop on Visual Computing for Biomedicine, ISSN 2070-5778, E-ISSN 2070-5786
Keywords
Computing methodologies, Neural networks, Human-centered computing, Visualization techniques;
National Category
Computer Sciences
Identifiers
urn:nbn:se:liu:diva-199166 (URN)10.2312/vcbm.20231212 (DOI)001537526000006 ()2-s2.0-85178255224 (Scopus ID)978-3-03868-216-5 (ISBN)
Conference
VCBM 2023: Eurographics Workshop on Visual Computing for Biology and Medicine, Norrköping, Sweden, September 20 – 22, 2023
Funder
Wallenberg AI, Autonomous Systems and Software Program (WASP)
Note

The fulltext is published under Creative Common license Attribution 4.0https://creativecommons.org/licenses/by/4.0/

No changes have been made to the publication.

Available from: 2023-11-13 Created: 2023-11-13 Last updated: 2025-10-10
Hansen, C., Procter, J., G Raidou, R., Jönsson, D. & Höllt, T. (Eds.). (2023). Eurographics Workshop on Visual Computing for Biology and Medicine: Frontmatter. Paper presented at Eurographics Workshop on Visual Computing for Biology and Medicine. Eurographics - European Association for Computer Graphics
Open this publication in new window or tab >>Eurographics Workshop on Visual Computing for Biology and Medicine: Frontmatter
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2023 (English)Conference proceedings (editor) (Other academic)
Place, publisher, year, edition, pages
Eurographics - European Association for Computer Graphics, 2023
National Category
Computer Sciences
Identifiers
urn:nbn:se:liu:diva-208111 (URN)10.2312/vcbm.20232019 (DOI)
Conference
Eurographics Workshop on Visual Computing for Biology and Medicine
Available from: 2024-10-03 Created: 2024-10-03 Last updated: 2024-12-12
Bäuerle, A., van Onzenoodt, C., Jönsson, D. & Ropinski, T. (2023). Semantic Hierarchical Exploration of Large Image Datasets. In: : . Paper presented at EuroVis 2023 - 25th EG Conference on Visualization, Leipzig, Germany, June 12 - 16, 2023 (pp. 103-107). Eurographics - European Association for Computer Graphics
Open this publication in new window or tab >>Semantic Hierarchical Exploration of Large Image Datasets
2023 (English)Conference paper, Published paper (Refereed)
Abstract [en]

We present a method for exploring and comparing large sets of images with metadata using a hierarchical interaction approach. Browsing many images at the same time requires either a large screen space or an abundance of scrolling interaction. We address this problem by projecting the images onto a two-dimensional Cartesian coordinate system by combining the latent space of vision neural networks and dimensionality reduction techniques. To alleviate overdraw of the images, we integrate a hierarchical layout and navigation, where each group of similar images is represented by the image closest to the group center. Advanced interactive analysis of images in relation to their metadata is enabled through integrated, flexible filtering based on expressions. Furthermore, groups of images can be compared through selection and automated aggregated metadata visualization. We showcase our method in three case studies involving the domains of photography, machine learning, and medical imaging.

Place, publisher, year, edition, pages
Eurographics - European Association for Computer Graphics, 2023
Keywords
Human-centered computing; Graphical user interfaces; Web-based interaction; Visual analytics
National Category
Computer Sciences
Identifiers
urn:nbn:se:liu:diva-208110 (URN)10.2312/evs.20231051 (DOI)9783038682196 (ISBN)
Conference
EuroVis 2023 - 25th EG Conference on Visualization, Leipzig, Germany, June 12 - 16, 2023
Available from: 2024-10-03 Created: 2024-10-03 Last updated: 2025-10-17Bibliographically approved
Jönsson, D., Kronander, J., Unger, J., Schön, T. & Wrenninge, M. (2022). Direct Transmittance Estimation in Heterogeneous Participating Media Using Approximated Taylor Expansions. Paper presented at Jul;28(7):2602-2614. IEEE Transactions on Visualization and Computer Graphics, 28(7), 2602-2614
Open this publication in new window or tab >>Direct Transmittance Estimation in Heterogeneous Participating Media Using Approximated Taylor Expansions
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2022 (English)In: IEEE Transactions on Visualization and Computer Graphics, ISSN 1077-2626, E-ISSN 1941-0506, Vol. 28, no 7, p. 2602-2614Article in journal (Refereed) Published
Abstract [en]

Evaluating the transmittance between two points along a ray is a key component in solving the light transport through heterogeneous participating media and entails computing an intractable exponential of the integrated medium's extinction coefficient. While algorithms for estimating this transmittance exist, there is a lack of theoretical knowledge about their behaviour, which also prevent new theoretically sound algorithms from being developed. For this purpose, we introduce a new class of unbiased transmittance estimators based on random sampling or truncation of a Taylor expansion of the exponential function. In contrast to classical tracking algorithms, these estimators are non-analogous to the physical light transport process and directly sample the underlying extinction function without performing incremental advancement. We present several versions of the new class of estimators, based on either importance sampling or Russian roulette to provide finite unbiased estimators of the infinite Taylor series expansion. We also show that the well known ratio tracking algorithm can be seen as a special case of the new class of estimators. Lastly, we conduct performance evaluations on both the central processing unit (CPU) and the graphics processing unit (GPU), and the results demonstrate that the new algorithms outperform traditional algorithms for heterogeneous mediums.

Place, publisher, year, edition, pages
IEEE, 2022
Keywords
Media, Taylor series, Rendering (computer graphics), Estimation, Upper bound, Monte Carlo methods
National Category
Signal Processing Computer and Information Sciences Probability Theory and Statistics
Identifiers
urn:nbn:se:liu:diva-178602 (URN)10.1109/TVCG.2020.3035516 (DOI)000801853400005 ()33141672 (PubMedID)
Conference
Jul;28(7):2602-2614
Funder
Knut and Alice Wallenberg Foundation, 2013-0076Swedish e‐Science Research CenterWallenberg AI, Autonomous Systems and Software Program (WASP)Swedish Foundation for Strategic Research, RIT15-0012ELLIIT - The Linköping‐Lund Initiative on IT and Mobile Communications
Note

Funding: Knut and Alice Wallenberg Foundation (KAW) [2013-0076]; SeRC (Swedish e-Science Research Center); Wallenberg AI, Autonomous Systems and Software Program (WASP); Swedish Foundation for Strategic Research (SSF) via the project ASSEMBLE [RIT15-0012]; ELLIIT environment for strategic research in Sweden

Available from: 2021-08-24 Created: 2021-08-24 Last updated: 2025-02-18Bibliographically approved
Bäuerle, A., Jönsson, D. & Ropinski, T. (2022). Neural Activation Patterns (NAPs): Visual Explainability of Learned Concepts.
Open this publication in new window or tab >>Neural Activation Patterns (NAPs): Visual Explainability of Learned Concepts
2022 (English)Manuscript (preprint) (Other academic)
Abstract [en]

A key to deciphering the inner workings of neural networks is understanding what a model has learned. Promising methods for discovering learned features are based on analyzing activation values, whereby current techniques focus on analyzing high activation values to reveal interesting features on a neuron level. However, analyzing high activation values limits layer-level concept discovery. We present a method that instead takes into account the entire activation distribution. By extracting similar activation profiles within the high-dimensional activation space of a neural network layer, we find groups of inputs that are treated similarly. These input groups represent neural activation patterns (NAPs) and can be used to visualize and interpret learned layer concepts. We release a framework with which NAPs can be extracted from pre-trained models and provide a visual introspection tool that can be used to analyze NAPs. We tested our method with a variety of networks and show how it complements existing methods for analyzing neural network activation values.

National Category
Computer Sciences
Identifiers
urn:nbn:se:liu:diva-208112 (URN)10.48550/arXiv.2206.10611 (DOI)
Available from: 2024-10-03 Created: 2024-10-03 Last updated: 2024-12-12Bibliographically approved
Rasheed, F., Jönsson, D., Nilsson, E., Masood, T. B. & Hotz, I. (2022). Subject-Specific Brain Activity Analysis in fMRI Data Using Merge Trees. In: 2022 IEEE WORKSHOP ON TOPOLOGICAL DATA ANALYSIS AND VISUALIZATION (TOPOINVIS 2022): . Paper presented at IEEE VIS Workshop on Topological Data Analysis and Visualization (TopoInVis), Oklahoma City, OK, oct 17, 2022 (pp. 113-123). IEEE
Open this publication in new window or tab >>Subject-Specific Brain Activity Analysis in fMRI Data Using Merge Trees
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2022 (English)In: 2022 IEEE WORKSHOP ON TOPOLOGICAL DATA ANALYSIS AND VISUALIZATION (TOPOINVIS 2022), IEEE , 2022, p. 113-123Conference paper, Published paper (Refereed)
Abstract [en]

We present a method for detecting patterns in time-varying functional magnetic resonance imaging (fMRI) data based on topological analysis. The oxygenated blood flow measured by fMRI is widely used as an indicator of brain activity. The signal is, however, prone to noise from various sources. Random brain activity, physiological noise, and noise from the scanner can reach a strength comparable to the signal itself. Thus, extracting the underlying signal is a challenging process typically approached by applying statistical methods. The goal of this work is to investigate the possibilities of recovering information from the signal using topological feature vectors directly based on the raw signal without medical domain priors. We utilize merge trees to define a robust feature vector capturing key features within a time step of fMRI data. We demonstrate how such a concise feature vector representation can be utilized for exploring the temporal development of brain activations, connectivity between these activations, and their relation to cognitive tasks.

Place, publisher, year, edition, pages
IEEE, 2022
Keywords
fMRI data analysis; data abstraction; temporal data; feature detection; merge tree; computational topology-based techniques
National Category
Signal Processing Computer Sciences Human Computer Interaction
Identifiers
urn:nbn:se:liu:diva-191883 (URN)10.1109/TopoInVis57755.2022.00018 (DOI)000913326500012 ()9781665493543 (ISBN)9781665493550 (ISBN)
Conference
IEEE VIS Workshop on Topological Data Analysis and Visualization (TopoInVis), Oklahoma City, OK, oct 17, 2022
Note

Funding Agencies|Wallenberg AI, Autonomous Systems and Software Program (WASP) - Knut and Alice Wallenberg Foundation; SeRC (Swedish e-Science Research Center); ELLIIT environment for strategic research in Sweden; Swedish Research Council (VR) [2019-05487]

Available from: 2023-02-23 Created: 2023-02-23 Last updated: 2023-06-09
Eilertsen, G., Jönsson, D., Ropinski, T., Unger, J. & Ynnerman, A. (2020). Classifying the classifier: dissecting the weight space of neural networks. In: Giuseppe De Giacomo, Alejandro Catala, Bistra Dilkina, Michela Milano, Senén Barro, Alberto Bugarín, Jérôme Lang (Ed.), Proceedings of the 24th European Conference on Artificial Intelligence (ECAI 2020): . Paper presented at European Conference on Artificial Intelligence (ECAI 2020) (pp. 1119-1126). IOS PRESS, 325, Article ID FAIA200209.
Open this publication in new window or tab >>Classifying the classifier: dissecting the weight space of neural networks
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2020 (English)In: Proceedings of the 24th European Conference on Artificial Intelligence (ECAI 2020) / [ed] Giuseppe De Giacomo, Alejandro Catala, Bistra Dilkina, Michela Milano, Senén Barro, Alberto Bugarín, Jérôme Lang, IOS PRESS , 2020, Vol. 325, p. 8p. 1119-1126, article id FAIA200209Conference paper, Published paper (Refereed)
Abstract [en]

This paper presents an empirical study on the weights of neural networks, where we interpret each model as a point in a high-dimensional space – the neural weight space. To explore the complex structure of this space, we sample from a diverse selection of training variations (dataset, optimization procedure, architecture,etc.) of neural network classifiers, and train a large number of models to represent the weight space. Then, we use a machine learning approach for analyzing and extracting information from this space. Most centrally, we train a number of novel deep meta-classifiers withthe objective of classifying different properties of the training setup by identifying their footprints in the weight space. Thus, the meta-classifiers probe for patterns induced by hyper-parameters, so that we can quantify how much, where, and when these are encoded through the optimization process. This provides a novel and complementary view for explainable AI, and we show how meta-classifiers can reveal a great deal of information about the training setup and optimization, by only considering a small subset of randomly selected consecutive weights. To promote further research on the weight space, we release the neural weight space (NWS) dataset – a collection of 320K weightsnapshots from 16K individually trained deep neural networks.

Place, publisher, year, edition, pages
IOS PRESS, 2020. p. 8
Series
Frontiers in Artificial Intelligence and Applications, ISSN 1879-8314 ; 325
Keywords
machine learning, deep learning, ai, computer vision
National Category
Computer graphics and computer vision Computer Sciences
Identifiers
urn:nbn:se:liu:diva-169431 (URN)10.3233/FAIA200209 (DOI)000650971301047 ()9781643681016 (ISBN)
Conference
European Conference on Artificial Intelligence (ECAI 2020)
Note

Funding: Wallenberg Autonomous Systems and Software Program (WASP); strategic research environment ELLIIT

Available from: 2020-09-15 Created: 2020-09-15 Last updated: 2025-02-01
Jönsson, D., Steneteg, P., Sundén, E., Englund, R., Kottravel, S., Falk, M., . . . Ropinski, T. (2020). Inviwo - A Visualization System with Usage Abstraction Levels. IEEE Transactions on Visualization and Computer Graphics, 26(11), 3241-3254
Open this publication in new window or tab >>Inviwo - A Visualization System with Usage Abstraction Levels
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2020 (English)In: IEEE Transactions on Visualization and Computer Graphics, ISSN 1077-2626, E-ISSN 1941-0506, Vol. 26, no 11, p. 3241-3254Article in journal (Refereed) Published
Abstract [en]

The complexity of todays visualization applications demands specific visualization systems tailored for the development of these applications. Frequently, such systems utilize levels of abstraction to improve the application development process, for insta

Place, publisher, year, edition, pages
IEEE, 2020
Keywords
Data visualization; Visualization; Pipelines; Debugging; Interoperability; Documentation; Games; Visualization systems; data visualization; visual analytics; data analysis; computer graphics; image processing
National Category
Computer and Information Sciences
Identifiers
urn:nbn:se:liu:diva-160860 (URN)10.1109/TVCG.2019.2920639 (DOI)000574745100009 ()31180858 (PubMedID)
Funder
Swedish e‐Science Research CenterELLIIT - The Linköping‐Lund Initiative on IT and Mobile CommunicationsSwedish Research Council, 2015-05462Knut and Alice Wallenberg Foundation, 2013- 0076
Note

Funding agencies:  Swedish e-Science Research Centre (SeRC); Deutsche Forschungsgemeinschaft (DFG)German Research Foundation (DFG) [RO3408/3-1]; ExcellenceCenter at Linkoping and Lund in Information Technology (ELLIIT); Knut and Alice Wallenberg Foundation (KAW)Knut & Alice

Available from: 2019-10-10 Created: 2019-10-10 Last updated: 2025-03-14
Jankowai, J., Skånberg, R., Jönsson, D., Ynnerman, A. & Hotz, I. (2020). Tensor volume exploration using attribute space representatives. In: : . Paper presented at LEVIA 2020.
Open this publication in new window or tab >>Tensor volume exploration using attribute space representatives
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2020 (English)Conference paper, Published paper (Refereed)
Abstract [en]

While volume rendering for scalar fields has been advanced into a powerful visualisation method, similar volumetric representations for tensor fields are still rare. The complexity of the data challenges not only the rendering but also the design of the transfer function. In this paper we propose an interface using glyph widgets to design a transfer function for the rendering of tensor data sets. Thereby the transfer function (TF) controls a volume rendering which represents sought after tensor-features and a texture that conveys directional information. The basis of the design interface is a two-dimensional projection of the attribute space. Characteristic representatives in the form of glyphs support an intuitive navigation through the attribute space. We provide three different options to select the representatives: automatic selection based on attribute space clustering, uniform sampling of the attribute space, or manually selected representatives. In contrast to glyphs placed into the 3D volume, we use glyphs with complex geometry as widgets to control the shape and extent of the representatives. In the final rendering the glyphs with their assigned colors play a similar role as a legend in an atlas like representation. The method provides an overview of the tensor field in the 3D volume at the same time as it allows the user to explore the tensor field in an attribute space. We demonstrate the flexibility of our approach on tensor fields for selected data sets with very different characteristics.

National Category
Computer and Information Sciences
Identifiers
urn:nbn:se:liu:diva-173161 (URN)10.31219/osf.io/qu8rz (DOI)
Conference
LEVIA 2020
Funder
ELLIIT - The Linköping‐Lund Initiative on IT and Mobile Communications, 996788
Available from: 2021-02-08 Created: 2021-02-08 Last updated: 2025-02-18Bibliographically approved
Organisations
Identifiers
ORCID iD: ORCID iD iconorcid.org/0000-0002-5220-633X

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