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Jönsson, D., Steneteg, P., Sundén, E., Englund, R., Kottravel, S., Falk, M., . . . Ropinski, T. (2020). Inviwo - A Visualization System with Usage Abstraction Levels. IEEE Transactions on Visualization and Computer Graphics, 26(11), 3241-3254
Open this publication in new window or tab >>Inviwo - A Visualization System with Usage Abstraction Levels
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2020 (English)In: IEEE Transactions on Visualization and Computer Graphics, ISSN 1077-2626, E-ISSN 1941-0506, Vol. 26, no 11, p. 3241-3254Article in journal (Refereed) Published
Abstract [en]

The complexity of todays visualization applications demands specific visualization systems tailored for the development of these applications. Frequently, such systems utilize levels of abstraction to improve the application development process, for insta

Place, publisher, year, edition, pages
IEEE, 2020
Keywords
Data visualization; Visualization; Pipelines; Debugging; Interoperability; Documentation; Games; Visualization systems; data visualization; visual analytics; data analysis; computer graphics; image processing
National Category
Computer and Information Sciences
Identifiers
urn:nbn:se:liu:diva-160860 (URN)10.1109/TVCG.2019.2920639 (DOI)000574745100009 ()31180858 (PubMedID)
Funder
Swedish e‐Science Research CenterELLIIT - The Linköping‐Lund Initiative on IT and Mobile CommunicationsSwedish Research Council, 2015-05462Knut and Alice Wallenberg Foundation, 2013- 0076
Note

Funding agencies:  Swedish e-Science Research Centre (SeRC); Deutsche Forschungsgemeinschaft (DFG)German Research Foundation (DFG) [RO3408/3-1]; ExcellenceCenter at Linkoping and Lund in Information Technology (ELLIIT); Knut and Alice Wallenberg Foundation (KAW)Knut & Alice

Available from: 2019-10-10 Created: 2019-10-10 Last updated: 2025-03-14
Englund, R. & Ropinski, T. (2018). Quantitative and Qualitative Analysis of the Perception of Semi-Transparent Structures in Direct Volume Rendering. Computer graphics forum (Print), 37(6), 174-187
Open this publication in new window or tab >>Quantitative and Qualitative Analysis of the Perception of Semi-Transparent Structures in Direct Volume Rendering
2018 (English)In: Computer graphics forum (Print), ISSN 0167-7055, E-ISSN 1467-8659, Vol. 37, no 6, p. 174-187Article in journal (Refereed) Published
Abstract [en]

Abstract Direct Volume Rendering (DVR) provides the possibility to visualize volumetric data sets as they occur in many scientific disciplines. With DVR semi-transparency is facilitated to convey the complexity of the data. Unfortunately, semi-transparency introduces challenges in spatial comprehension of the data, as the ambiguities inherent to semi-transparent representations affect spatial comprehension. Accordingly, many techniques have been introduced to enhance the spatial comprehension of DVR images. In this paper, we present our findings obtained from two evaluations investigating the perception of semi-transparent structures from volume rendered images. We have conducted a user evaluation in which we have compared standard DVR with five techniques previously proposed to enhance the spatial comprehension of DVR images. In this study, we investigated the perceptual performance of these techniques and have compared them against each other in a large-scale quantitative user study with 300 participants. Each participant completed micro-tasks designed such that the aggregated feedback gives insight on how well these techniques aid the user to perceive depth and shape of objects. To further clarify the findings, we conducted a qualitative evaluation in which we interviewed three experienced visualization researchers, in order to find out if we can identify the benefits and shortcomings of the individual techniques.

Place, publisher, year, edition, pages
Wiley-Blackwell, 2018
Keywords
scientific visualization, volume visualization, Computing methodologies → Perception; Human-centred computing → Scientific visualization
National Category
Computer and Information Sciences
Identifiers
urn:nbn:se:liu:diva-149551 (URN)10.1111/cgf.13320 (DOI)000437272800012 ()
Note

Funding agencies: Excellence Center at Linkoping and Lund in Information Technology (ELLIIT); Swedish e-Science Research Centre (SeRC)

Available from: 2018-07-05 Created: 2018-07-05 Last updated: 2025-02-18
Gustafsson, T., Engelke, W., Englund, R. & Hotz, I. (2017). Concepts of Hybrid Data Rendering. In: Ingrid Hotz and Martin Falk (Ed.), Proceedings of SIGRAD 2017, August 17-18, 2017 Norrköping, Sweden: . Paper presented at SIGRAD 2017, August 17-18, 2017 Norrköping, Sweden (pp. 32-39). Linköping: Linköping University Electronic Press, 143
Open this publication in new window or tab >>Concepts of Hybrid Data Rendering
2017 (English)In: Proceedings of SIGRAD 2017, August 17-18, 2017 Norrköping, Sweden / [ed] Ingrid Hotz and Martin Falk, Linköping: Linköping University Electronic Press, 2017, Vol. 143, p. 32-39Conference paper, Published paper (Refereed)
Abstract [en]

We present a concept for interactive rendering of multiple data sets of varying type, including geometry and volumetric data, in one scene with correct transparency. Typical visualization applications involve multiple data fields from various sources. A thorough understanding of such data often requires combined rendering of theses fields. The choice of the visualization concepts, and thus the rendering techniques, depends on the context and type of the individual fields. Efficiently combining different techniques in one scene, however, is not always a straightforward task. We tackle this problem by using an A-buffer based approach to gather color and transparency information from different sources, combine them and generate the final output image. Thereby we put special emphasis on efficiency and low memory consumption to allow a smooth exploration of the data. Therefore, we compare different A-buffer implementations with respect to memory consumption and memory access pattern. Additionally we introduce an early-fragment-discarding heuristic using inter-frame information to speed up the rendering..

Place, publisher, year, edition, pages
Linköping: Linköping University Electronic Press, 2017
Series
Linköping Electronic Conference Proceedings, ISSN 1650-3686, E-ISSN 1650-3740 ; 143
Keywords
Hybrid Rendering, A-Buffer, Volume Rendering
National Category
Computer and Information Sciences
Identifiers
urn:nbn:se:liu:diva-143256 (URN)9789176853849 (ISBN)
Conference
SIGRAD 2017, August 17-18, 2017 Norrköping, Sweden
Available from: 2017-11-27 Created: 2017-11-27 Last updated: 2018-04-03Bibliographically approved
Englund, R., Kottravel, S. & Ropinski, T. (2016). A Crowdsourcing System for Integrated and Reproducible Evaluation in Scientific Visualization. In: 2016 IEEE Pacific Visualization Symposium (PacificVis): . Paper presented at Pacific Visualization Symposium (PacificVis. 19-22 April 2016, Taipei, Taiwan (pp. 40-47). IEEE Computer Society
Open this publication in new window or tab >>A Crowdsourcing System for Integrated and Reproducible Evaluation in Scientific Visualization
2016 (English)In: 2016 IEEE Pacific Visualization Symposium (PacificVis), IEEE Computer Society, 2016, p. 40-47Conference paper, Published paper (Refereed)
Abstract [en]

User evaluations have gained increasing importance in visualization research over the past years, as in many cases these evaluations are the only way to support the claims made by visualization researchers. Unfortunately, recent literature reviews show that in comparison to algorithmic performance evaluations, the number of user evaluations is still very low. Reasons for this are the required amount of time to conduct such studies together with the difficulties involved in participant recruitment and result reporting. While it could be shown that the quality of evaluation results and the simplified participant recruitment of crowdsourcing platforms makes this technology a viable alternative to lab experiments when evaluating visualizations, the time for conducting and reporting such evaluations is still very high. In this paper, we propose a software system, which integrates the conduction, the analysis and the reporting of crowdsourced user evaluations directly into the scientific visualization development process. With the proposed system, researchers can conduct and analyze quantitative evaluations on a large scale through an evaluation-centric user interface with only a few mouse clicks. Thus, it becomes possible to perform iterative evaluations during algorithm design, which potentially leads to better results, as compared to the time consuming user evaluations traditionally conducted at the end of the design process. Furthermore, the system is built around a centralized database, which supports an easy reuse of old evaluation designs and the reproduction of old evaluations with new or additional stimuli, which are both driving challenges in scientific visualization research. We will describe the system's design and the considerations made during the design process, and demonstrate the system by conducting three user evaluations, all of which have been published before in the visualization literature.

Place, publisher, year, edition, pages
IEEE Computer Society, 2016
National Category
Other Computer and Information Science
Identifiers
urn:nbn:se:liu:diva-128702 (URN)10.1109/PACIFICVIS.2016.7465249 (DOI)000386185000006 ()9781509014514 (ISBN)
Conference
Pacific Visualization Symposium (PacificVis. 19-22 April 2016, Taipei, Taiwan
Available from: 2016-05-30 Created: 2016-05-30 Last updated: 2018-01-10Bibliographically approved
Englund, R., Ropinski, T. & Hotz, I. (2016). Coherence Maps for Blood Flow Exploration. In: VCBM 16: Eurographics Workshop on Visual Computing for Biology and Medicine: . Paper presented at The 6th Eurographics Workshop on Visual Computing for Biology and Medicine, Bergen, Norway, September 7-9, 2016 (pp. 79-88). Eurographics - European Association for Computer Graphics
Open this publication in new window or tab >>Coherence Maps for Blood Flow Exploration
2016 (English)In: VCBM 16: Eurographics Workshop on Visual Computing for Biology and Medicine, Eurographics - European Association for Computer Graphics, 2016, p. 79-88Conference paper, Published paper (Refereed)
Abstract [en]

Blood flow data from direct measurements (4D flow MRI) or numerical simulations opens new possibilities for the understanding of the development of cardiac diseases. However, before this new data can be used in clinical studies or for diagnosis, it is important to develop a notion of the characteristics of typical flow structures. To support this process we developed a novel blood flow clustering and exploration method. The method builds on the concept of coherent flow structures. Coherence maps for cross-sectional slices are defined to show the overall degree of coherence of the flow. In coherent regions the method summarizes the dominant blood flow using a small number of pathline representatives. In contrast to other clustering approaches the clustering is restricted to coherent regions and pathlines with low coherence values, which are not suitable for clustering and thus are not forced into clusters. The coherence map is based on the Finite-time Lyapunov Exponent (FTLE). It is created on selected planes in the inflow respective outflow area of a region of interest. The FTLE value measures the rate of separation of pathlines originating from this plane. Different to previous work using FTLE we do not focus on separating extremal lines but on local minima and regions of low FTLE intensities to extract coherent flow. The coherence map and the extracted clusters serve as basis for the flow exploration. The extracted clusters can be selected and inspected individually. Their flow rate and coherence provide a measure for their significance. Switching off clusters reduces the amount of occlusion and reveals the remaining part of the flow. The non-coherent regions can also be explored by interactive manual pathline seeding in the coherence map.

Place, publisher, year, edition, pages
Eurographics - European Association for Computer Graphics, 2016
Series
Eurographics Workshop on Visual Computing for Biology and Medicine, ISSN 2070-5778, E-ISSN 2070-5786
National Category
Computer and Information Sciences
Identifiers
urn:nbn:se:liu:diva-130979 (URN)10.2312/vcbm.20161274 (DOI)978-3-03868-010-9 (ISBN)
Conference
The 6th Eurographics Workshop on Visual Computing for Biology and Medicine, Bergen, Norway, September 7-9, 2016
Available from: 2016-09-02 Created: 2016-09-02 Last updated: 2018-02-08Bibliographically approved
Englund, R. & Ropinski, T. (2014). Ultrasound Surface Extraction Using Radial Basis Functions. In: George Bebis (Ed.), Advances in Visual Computing: 10th International Symposium, ISVC 2014, Las Vegas, NV, USA, December 8-10, 2014, Proceedings, Part II. Paper presented at International Symposium on Visual Computing (pp. 163-172). Springer Publishing Company, 8888
Open this publication in new window or tab >>Ultrasound Surface Extraction Using Radial Basis Functions
2014 (English)In: Advances in Visual Computing: 10th International Symposium, ISVC 2014, Las Vegas, NV, USA, December 8-10, 2014, Proceedings, Part II / [ed] George Bebis, Springer Publishing Company, 2014, Vol. 8888, p. 163-172Conference paper, Published paper (Refereed)
Abstract [en]

Data acquired from ultrasound examinations is of interest not only for the physician, but also for the patient. While the physician uses the ultrasound data for diagnostic purposes the patient might be more interested in beautiful images in the case of prenatal imaging. Ultrasound data is noisy by nature and visually compelling 3D renderings are not always trivial to produce. This paper presents a technique which enables extraction of a smooth surface mesh from the ultrasound data by combining previous research in ultrasound processing with research in point cloud surface reconstruction. After filtering the ultrasound data using Variational Classification we extract a set of surface points. This set of points is then used to train an Adaptive Compactly Supported Radial Basis Functions system, a technique for surface reconstruction of noisy laser scan data. The resulting technique can be used to extract surfaces with adjustable smoothness and resolution and has been tested on various ultrasound datasets.

Place, publisher, year, edition, pages
Springer Publishing Company, 2014
Series
Lecture Notes in Computer Science, ISSN 0302-9743, E-ISSN 1611-3349 ; 8888
National Category
Other Computer and Information Science
Identifiers
urn:nbn:se:liu:diva-117764 (URN)10.1007/978-3-319-14364-4_16 (DOI)000354700300016 ()978-3-319-14364-4 (ISBN)978-3-319-14363-7 (ISBN)
Conference
International Symposium on Visual Computing
Available from: 2015-05-08 Created: 2015-05-08 Last updated: 2018-02-19Bibliographically approved
Organisations
Identifiers
ORCID iD: ORCID iD iconorcid.org/0000-0002-5693-2830

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