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Detecting Domain Shift in Multiple Instance Learning for Digital Pathology Using Fréchet Domain Distance
Linköpings universitet, Institutionen för teknik och naturvetenskap, Medie- och Informationsteknik. Linköpings universitet, Tekniska fakulteten. Linköpings universitet, Centrum för medicinsk bildvetenskap och visualisering, CMIV.ORCID-id: 0000-0002-8734-6500
Linköpings universitet, Institutionen för teknik och naturvetenskap, Medie- och Informationsteknik. Linköpings universitet, Tekniska fakulteten. Linköpings universitet, Centrum för medicinsk bildvetenskap och visualisering, CMIV.ORCID-id: 0000-0002-9217-9997
Linköpings universitet, Institutionen för biomedicinska och kliniska vetenskaper, Avdelningen för neurobiologi. Linköpings universitet, Medicinska fakulteten. Region Östergötland, Diagnostikcentrum, Klinisk patologi.
Linköpings universitet, Institutionen för teknik och naturvetenskap, Medie- och Informationsteknik. Linköpings universitet, Tekniska fakulteten. Linköpings universitet, Centrum för medicinsk bildvetenskap och visualisering, CMIV. Sectra AB, Linköping, Sweden.ORCID-id: 0000-0002-9368-0177
2023 (engelsk)Inngår i: Medical Image Computing and Computer Assisted Intervention – MICCAI 2023: 26th International Conference, Vancouver, BC, Canada, October 8–12, 2023, Proceedings, Part V / [ed] Hayit Greenspan, Anant Madabhushi, Parvin Mousavi, Septimiu Salcudean, James Duncan, Tanveer Syeda-Mahmood, Russell Taylor, Springer, 2023, Vol. 14224, s. 157-167Konferansepaper, Publicerat paper (Fagfellevurdert)
Abstract [en]

Multiple-instance learning (MIL) is an attractive approach for digital pathology applications as it reduces the costs related to data collection and labelling. However, it is not clear how sensitive MIL is to clinically realistic domain shifts, i.e., differences in data distribution that could negatively affect performance, and if already existing metrics for detecting domain shifts work well with these algorithms. We trained an attention-based MIL algorithm to classify whether a whole-slide image of a lymph node contains breast tumour metastases. The algorithm was evaluated on data from a hospital in a different country and various subsets of this data that correspond to different levels of domain shift. Our contributions include showing that MIL for digital pathology is affected by clinically realistic differences in data, evaluating which features from a MIL model are most suitable for detecting changes in performance, and proposing an unsupervised metric named Fréchet Domain Distance (FDD) for quantification of domain shifts. Shift measure performance was evaluated through the mean Pearson correlation to change in classification performance, where FDD achieved 0.70 on 10-fold cross-validation models. The baselines included Deep ensemble, Difference of Confidence, and Representation shift which resulted in 0.45, -0.29, and 0.56 mean Pearson correlation, respectively. FDD could be a valuable tool for care providers and vendors who need to verify if a MIL system is likely to perform reliably when implemented at a new site, without requiring any additional annotations from pathologists.

sted, utgiver, år, opplag, sider
Springer, 2023. Vol. 14224, s. 157-167
Serie
Lecture Notes in Computer Science, ISSN 0302-9743, E-ISSN 1611-3349 ; 14224
Emneord [en]
Deep learning, domain shift detection, multiple instance learning, digital pathology
HSV kategori
Identifikatorer
URN: urn:nbn:se:liu:diva-199190DOI: 10.1007/978-3-031-43904-9_16ISI: 001109633700016Scopus ID: 2-s2.0-85174689282ISBN: 9783031439032 (tryckt)ISBN: 9783031439049 (digital)OAI: oai:DiVA.org:liu-199190DiVA, id: diva2:1812253
Konferanse
MICCAI 2023, Vancouver, BC, Canada, October 8–12, 2023
Forskningsfinansiär
Vinnova
Merknad

Funding: Swedish e-Science Research Center; VINNOVA; CENIIT career development program at Linkoping University; Wallenberg AI, WASP - Knut and Alice Wallenberg Foundation

Tilgjengelig fra: 2023-11-15 Laget: 2023-11-15 Sist oppdatert: 2025-02-09bibliografisk kontrollert

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Pocevičiūtė, MildaEilertsen, GabrielGarvin, StinaLundström, Claes

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