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Brain tumor segmentation using synthetic MR images - A comparison of GANs and diffusion models
Linköpings universitet, Institutionen för medicinsk teknik, Avdelningen för medicinsk teknik. Linköpings universitet, Tekniska fakulteten. Linköpings universitet, Centrum för medicinsk bildvetenskap och visualisering, CMIV.
Eigenvision, Malmö, Sweden.
Linköpings universitet, Medicinska fakulteten. Linköpings universitet, Centrum för medicinsk bildvetenskap och visualisering, CMIV. Region Östergötland, Diagnostikcentrum, Röntgenkliniken i Linköping. Linköpings universitet, Institutionen för hälsa, medicin och vård, Avdelningen för diagnostik och specialistmedicin.ORCID-id: 0000-0002-8857-5698
Linköpings universitet, Institutionen för medicinsk teknik, Avdelningen för medicinsk teknik. Linköpings universitet, Tekniska fakulteten. Linköpings universitet, Centrum för medicinsk bildvetenskap och visualisering, CMIV. Linköpings universitet, Institutionen för datavetenskap, Statistik och maskininlärning.ORCID-id: 0000-0001-7061-7995
2024 (engelsk)Inngår i: Scientific Data, E-ISSN 2052-4463, Vol. 11, nr 1, artikkel-id 259Artikkel i tidsskrift (Fagfellevurdert) Published
Abstract [en]

Large annotated datasets are required for training deep learning models, but in medical imaging data sharing is often complicated due to ethics, anonymization and data protection legislation. Generative AI models, such as generative adversarial networks (GANs) and diffusion models, can today produce very realistic synthetic images, and can potentially facilitate data sharing. However, in order to share synthetic medical images it must first be demonstrated that they can be used for training different networks with acceptable performance. Here, we therefore comprehensively evaluate four GANs (progressive GAN, StyleGAN 1–3) and a diffusion model for the task of brain tumor segmentation (using two segmentation networks, U-Net and a Swin transformer). Our results show that segmentation networks trained on synthetic images reach Dice scores that are 80%–90% of Dice scores when training with real images, but that memorization of the training images can be a problem for diffusion models if the original dataset is too small. Our conclusion is that sharing synthetic medical images is a viable option to sharing real images, but that further work is required. The trained generative models and the generated synthetic images are shared on AIDA data hub.

sted, utgiver, år, opplag, sider
Nature Publishing Group, 2024. Vol. 11, nr 1, artikkel-id 259
Emneord [en]
Deep learning, brain tumor, magnetic resonance imaging, synthetic images, generative adversarial networks, diffusion models
HSV kategori
Identifikatorer
URN: urn:nbn:se:liu:diva-201435DOI: 10.1038/s41597-024-03073-xISI: 001177063000006PubMedID: 38424097Scopus ID: 2-s2.0-85186294143OAI: oai:DiVA.org:liu-201435DiVA, id: diva2:1843384
Forskningsfinansiär
Vinnova, 2021-01954Vinnova, 2021-01420Åke Wiberg Foundation, M22-0088
Merknad

Funding Agencies|ITEA/VINNOVA project ASSIST [2021-01420]; LiU Cancer; VINNOVA AIDA [M22-0088]; Ake Wiberg foundation; Wallenberg Center for Molecular Medicine as an associated clinical fellow;  [2021-01954]

Tilgjengelig fra: 2024-03-09 Laget: 2024-03-09 Sist oppdatert: 2025-02-09bibliografisk kontrollert

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Akbar, Muhammad UsmanBlystad, IdaEklund, Anders

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