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Towards Subject Specific Aortic Wall Shear Stress: a combined CFD and MRI approach
Linköpings universitet, Institutionen för ekonomisk och industriell utveckling, Mekanisk värmeteori och strömningslära. Linköpings universitet, Centrum för medicinsk bildvetenskap och visualisering, CMIV. Linköpings universitet, Tekniska högskolan.
2011 (engelsk)Doktoravhandling, med artikler (Annet vitenskapelig)
Abstract [en]

The cardiovascular system is an important part of the human body since it transports both energy and oxygen to all cells throughout the body. Diseases in this system are often dangerous and cardiovascular diseases are the number one killer in the western world. Common cardiovascular diseases are heart attack and stroke, which origins from obstructed blood flow. It is generally important to understand the causes for these cardiovascular diseases. The main causes for these diseases are atherosclerosis development in the arteries (hardening and abnormal growth). This transform of the arterial wall is believed to be influenced by the mechanical load from the flowing blood on the artery and especially the tangential force the wall shear stress. To retrieve wall shear stress information in arteries invivo is highly interesting due to the coupling to atherosclerosis and indeed a challenge. The goal of this thesis is to develop, describe and evaluate an in-vivo method for subject specific wall shear stress estimations in the human aorta, the largest artery in the human body. The method uses an image based computational fluid dynamics approach in order to estimate the wall shear stress. To retrieve in-vivo geometrical descriptions of the aorta magnetic resonance imaging capabilities is used which creates image material describing the subject specific geometry of the aorta. Magnetic resonance imaging is also used to retrieve subject specific blood velocity information in the aorta. Both aortic geometry and velocity is gained at the same time. Thereafter the image material is interpreted using level-set segmentation in order to get a three-dimensional description of the aorta. Computational fluid dynamics simulations is applied on the subject specific aorta in order to calculate time resolved wall shear stress distribution at the entire aortic wall included in the actual model.

This work shows that it is possible to estimate subject specific wall shear stress in the human aorta. The results from a group of healthy volunteers revealed that the arterial geometry is very subject specific and the different wall shear stress distributions have general similarities but the level and local distribution are clearly different. Sensitivity (on wall shear stress) to image modality, the different segmentation methods and different inlet velocity profiles have been tested, which resulted in these general conclusions:

  • The aortic diameter from magnetic resonance imaging became similar to the reference diameter measurement method.
  • The fast semi-automatic level-set segmentation method gave similar geometry and wall shear stress results when compared to a reference segmentation method.
  • Wall shear stress distribution became different when comparing a simplified uniform velocity profile inlet boundary condition with a measured velocity profile.

The method proposed in this thesis has the possibility to produce subject specific wall shear stress distribution in the human aorta. The method can be used for further medical research regarding atherosclerosis development and has the possibility for usage in clinical work.

sted, utgiver, år, opplag, sider
Linköping: Linköping University Electronic Press , 2011. , s. 40
Serie
Linköping Studies in Science and Technology. Dissertations, ISSN 0345-7524 ; 1360
HSV kategori
Identifikatorer
URN: urn:nbn:se:liu:diva-65910ISBN: 978-91-7393-244-8 (tryckt)OAI: oai:DiVA.org:liu-65910DiVA, id: diva2:400295
Disputas
2011-04-12, ACAS, hus A, Campus Valla, Linköpings universitet, Linköping, 10:15 (engelsk)
Opponent
Veileder
Tilgjengelig fra: 2011-02-25 Laget: 2011-02-25 Sist oppdatert: 2025-02-09bibliografisk kontrollert
Delarbeid
1. Subject Specific Wall Shear Stress in the Human Thoracic Aorta
Åpne denne publikasjonen i ny fane eller vindu >>Subject Specific Wall Shear Stress in the Human Thoracic Aorta
2006 (engelsk)Inngår i: WSEAS Transaction on biology and biomedicine, ISSN 1109-9518, Vol. 10, nr 3, s. 609-614Artikkel i tidsskrift (Fagfellevurdert) Published
Abstract [en]

Numerous studies have shown a correlation between Wall Shear Stress (WSS) and atherosclerosis, but few have evaluated the reliability of estimation methods and measures used to assessWSS, which is the subject of this work. A subject specific vessel model of the aortic arch and thoracic aorta is created fromMRI images and used for CFD simulations with MRI velocity measurements as inlet boundary condition. WSS is computed from the simulation results. Aortic WSS shows significant spatial as well as temporal variation during a cardiac cycle, which makes circumferential values very uninformative, and approximate estimates using Hagen-Poiseuille fails predict the averageWSS. Highly asymmetric flow, especially in the arch, causes the spatial WSS variations.

Emneord
Wall shear stress, CFD, Aorta, Circumferential average values, Asymmetric flow
HSV kategori
Identifikatorer
urn:nbn:se:liu:diva-43727 (URN)74619 (Lokal ID)74619 (Arkivnummer)74619 (OAI)
Tilgjengelig fra: 2009-10-10 Laget: 2009-10-10 Sist oppdatert: 2017-03-27bibliografisk kontrollert
2. Feasibility of Patient Specific Aortic Blood Flow CFD Simulation
Åpne denne publikasjonen i ny fane eller vindu >>Feasibility of Patient Specific Aortic Blood Flow CFD Simulation
Vise andre…
2006 (engelsk)Inngår i: Medical Image Computing and Computer-Assisted Intervention – MICCAI 2006: 9th International Conference, Copenhagen, Denmark, October 1-6, 2006. Proceedings, Part I / [ed] Rasmus Larsen, Mads Nielsen and Jon Sporring, Springer Berlin/Heidelberg, 2006, 1, Vol. 4190, s. 257-263Konferansepaper, Publicerat paper (Fagfellevurdert)
Abstract [en]

Patient specific modelling of the blood flow through the human aorta is performed using computational fluid dynamics (CFD) and magnetic resonance imaging (MRI). Velocity patterns are compared between computer simulations and measurements. The workflow includes several steps: MRI measurement to obtain both geometry and velocity, an automatic levelset segmentation followed by meshing of the geometrical model and CFD setup to perform the simulations follwed by the actual simulations. The computational results agree well with the measured data.

sted, utgiver, år, opplag, sider
Springer Berlin/Heidelberg, 2006 Opplag: 1
Serie
Lecture Notes in Computer Science, ISSN 0302-9743, E-ISSN 1611-3349 ; 4190
HSV kategori
Identifikatorer
urn:nbn:se:liu:diva-36902 (URN)10.1007/11866565_32 (DOI)000241556300032 ()32988 (Lokal ID)3-5404-4707-5 (ISBN)978-3-540-44727-6 (ISBN)978-3-540-44707-8 (ISBN)32988 (Arkivnummer)32988 (OAI)
Konferanse
The 9th MICCAI Conference, Copenhagen, Denmark, 1-6 October 2006
Tilgjengelig fra: 2009-10-10 Laget: 2009-10-10 Sist oppdatert: 2025-02-09bibliografisk kontrollert
3. Evaluation of Aortic Geometries created by MRI Data in Man
Åpne denne publikasjonen i ny fane eller vindu >>Evaluation of Aortic Geometries created by MRI Data in Man
Vise andre…
2011 (engelsk)Inngår i: Clinical Physiology and Functional Imaging, ISSN 1475-0961, E-ISSN 1475-097X, Vol. 31, nr 6, s. 485-491Artikkel i tidsskrift (Fagfellevurdert) Published
Abstract [en]

The development of atherosclerotic plaques has been associated with the patterns of wall shear stress (WSS). However, much is still uncertain with the methods used to calculate WSS. Correct vessel geometries are mandatory to get reliable estimations and the purpose of this study was to evaluate an in vivo method for creating aortic 3D geometry in man based on data from magnetic resonance imaging (MRI) with ultrasound as reference.

Methods: The aortas of ten healthy males, 23.4 ± 1.6 years of age, were examined with MRI, and 3D geometries were created with manual segmentation of the images. Lumen diameters (LD) were measured in the abdominal aorta (AA) and the thoracic aorta (TA) with non-invasive B-mode ultrasound as a reference.

Results: The anteroposterior diameter of the AA was 13.6 ± 1.1 mm for the MRI and 13.8 ± 1.3 mm for the ultrasound (NS). Intraobserver variability (CV) for MRI and ultrasound was <0.92% and <0.40% respectively . Interobserver variability MRI and ultrasound was 0.96% and 0.56% respectively. The diameter of the TA was 19.2 ± 1.4 mm for the MRI, and the intraobserver variability (CV) were <0.78% and interobserver variability (CV) were 0.92%.

Conclusion: Specific arterial geometries can be constructed with a high degree of accuracy using MRI. This indicate that the MRI geometries may be used to create realistic and correct geometries in the calculation of WSS in the aorta of man.

sted, utgiver, år, opplag, sider
Wiley-Blackwell, 2011
Emneord
human aorta, lumen diameter, magnetic resonance imaging, manual segmentation, ultrasound
HSV kategori
Identifikatorer
urn:nbn:se:liu:diva-65905 (URN)10.1111/j.1475-097X.2011.01035.x (DOI)000296198100011 ()
Tilgjengelig fra: 2011-02-25 Laget: 2011-02-25 Sist oppdatert: 2017-12-11bibliografisk kontrollert
4. Wall Shear Stress Estimations using Semi-Automatic Segmentation
Åpne denne publikasjonen i ny fane eller vindu >>Wall Shear Stress Estimations using Semi-Automatic Segmentation
Vise andre…
(engelsk)Manuskript (preprint) (Annet vitenskapelig)
Abstract [en]

Atherosclerosis development is strongly believed to be influenced by hemodynamic forces such as wall shear stress (WSS). To estimate such entity in-vivo in humans, is image based computational fluid dynamics (CFD) a powerful tool. In this paper we use a combination of magnetic resonance imaging (MRI) and CFD to estimate WSS. In such method a number of steps is included. One important step is the image interpretation into 3D models, named segmentation. The choice of segmentation method can influence the resulting WSS distribution in the human aorta. This is studied by comparingWSS results gained from the use of two different segmentation approaches: manual and semi-automatic, where the manual approach is considered to be the reference method. The investigation is performed on a group of 8 healthymale volunteers. The different segmentation methods give slightly different geometrical descriptions of the human aorta. However there is a very good agreement between the resultingWSS distribution for the two segmentation approaches. The small differences in WSS between the methods increase in the late systole and early diastolic cardiac cycle time position indicating that theWSS is more sensitive to local geometry differences in these parts of the cardiac cycle. We can conclude that the results show that the semi-automatic segmentation method can be used in the future to estimate WSS with relevant accuracy.

HSV kategori
Identifikatorer
urn:nbn:se:liu:diva-65906 (URN)
Tilgjengelig fra: 2011-02-25 Laget: 2011-02-25 Sist oppdatert: 2017-03-27bibliografisk kontrollert
5. A method for subject specific estimation of aortic wall shear stress
Åpne denne publikasjonen i ny fane eller vindu >>A method for subject specific estimation of aortic wall shear stress
Vise andre…
2009 (engelsk)Inngår i: WSEAS Transactions on Biology and Biomedicine, ISSN 1109-9518, Vol. 6, nr 3, s. 49-57Artikkel i tidsskrift (Fagfellevurdert) Published
Abstract [en]

Wall shear stress (WSS) distribution in the human aorta is a highly interesting hemodynamic factor for atherosclerosis development. We present a magnetic resonance imaging (MRI) and computational fluid dynamics (CFD) based subject specific WSS estimation method and demonstrate it on a group of nine healthy volunteers (males age 23.6 ± 1.3 years). In all nine subjects, the aortic blood flow was simulated in a subject specific way, where the 3D segmented geometries and inflow profiles were obtained using MRI. No parameter settings were tailored using data from the nine subjects. Validation was performed by comparing CFD gained velocity with magnetic resonance imaging (MRI) velocity measurements. CFD and MRI velocity profiles were comparable, but the temporal variations of the differences during the cardiac cycle were significant. Spatio-temporal analyzes on the WSS distribution showed a strong subject specific influence. Subject specific models are decisive to estimate WSS distribution.

sted, utgiver, år, opplag, sider
WSEAS Press, 2009
Emneord
3D segmentation; Aorta; CFD; MRI; Subject specific; Velocity validation; WSS
HSV kategori
Identifikatorer
urn:nbn:se:liu:diva-57056 (URN)
Tilgjengelig fra: 2010-06-11 Laget: 2010-06-09 Sist oppdatert: 2017-03-27bibliografisk kontrollert
6. Is a flat inlet profile sufficient for WSS estimation in the aortic arch?
Åpne denne publikasjonen i ny fane eller vindu >>Is a flat inlet profile sufficient for WSS estimation in the aortic arch?
2009 (engelsk)Inngår i: WSEAS Transactions on Fluid Mechanics, ISSN 1790-5087, Vol. 4, nr 4, s. 148-160Artikkel i tidsskrift (Fagfellevurdert) Published
Abstract [en]

Atherosclerosis is one of the main reasons for cardivascular disease which cause many deaths every year especially in the Western world. The development of atherosclerosis is strongly believed to be influenced by hemodynamic forces in the arteries e.g. wall shear stress (WSS). Estimations of WSS are therefore very important. By combining magnetic resonance imaging (MRI), image processing and computational fluid dynamic (CFD) simulations, it is possible to estimate subject specific WSS in the human arteries. The framework for performing such work includes i.e. using inlet boundary conditions which, however, will influence the final result i.e. the WSS distribution. This paper aims to investigate the influence of the inflow boundary condition in the human aorta with comparing two settings for the inflow: 1) subject specific inlet profile measured with MRI and 2) uniform profile with the subject specific mass flow rate. The analysis of WSS will be performed both on spatial location along the artery as well as on the temporal location in the cardiac cycle. Subject specific data have been used for geometry, inflow velocity profile and blood viscosity. The recommendation due to our findings from nine healthy subjects, is that a measured subject specific inlet boundary condition must be used in order to get a subject specific WSS distribution; the difference in WSS is 8-34% compared to using a mass-flow correct uniform profile. Temporal variations were clearly seen in the WSS differences due to the different inflow velocity profiles used. The lowest influence of the inlet boundary condition was found at peak velocity in the cardiac cycle. The aortic geometry does not form the flow in such extent (compared to the influence by inlet boundary condition) to obtain a more correct WSS distribution further away from the inlet at the systolic parts of the cardiac cycle. The shape of the vessel has only a significant influence at low velocities i.e. the diastolic phase of the cardiac cycle.

Emneord
Aorta; CFD; Inlet boundary condition; Subject specific; Uniform velocity profile; Wall shear stress
HSV kategori
Identifikatorer
urn:nbn:se:liu:diva-53002 (URN)
Tilgjengelig fra: 2010-01-14 Laget: 2010-01-14 Sist oppdatert: 2017-03-27bibliografisk kontrollert

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