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Developments and applications of the OPTIMADE API for materials discovery, design, and data exchange
UCLouvain, Belgium; Matgenix SRL, Belgium.
Ecole Polytech Fed Lausanne, Switzerland.
Vilnius Univ, Lithuania.
SINTEF, Norway.
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2024 (Engelska)Ingår i: Digital Discovery, E-ISSN 2635-098X, Vol. 3, nr 8, s. 1509-1533Artikel i tidskrift (Refereegranskat) Published
Abstract [en]

The Open Databases Integration for Materials Design (OPTIMADE) application programming interface (API) empowers users with holistic access to a growing federation of databases, enhancing the accessibility and discoverability of materials and chemical data. Since the first release of the OPTIMADE specification (v1.0), the API has undergone significant development, leading to the v1.2 release, and has underpinned multiple scientific studies. In this work, we highlight the latest features of the API format, accompanying software tools, and provide an update on the implementation of OPTIMADE in contributing materials databases. We end by providing several use cases that demonstrate the utility of the OPTIMADE API in materials research that continue to drive its ongoing development. The Open Databases Integration for Materials Design (OPTIMADE) application programming interface (API) empowers users with holistic access to a federation of databases, enhancing the accessibility and discoverability of materials and chemical data.

Ort, förlag, år, upplaga, sidor
ROYAL SOC CHEMISTRY , 2024. Vol. 3, nr 8, s. 1509-1533
Nationell ämneskategori
Datorteknik
Identifikatorer
URN: urn:nbn:se:liu:diva-206760DOI: 10.1039/d4dd00039kISI: 001253257300001PubMedID: 39118978OAI: oai:DiVA.org:liu-206760DiVA, id: diva2:1892371
Anmärkning

Funding Agencies|CECAM in Lausanne (Switzerland); Lorentz Center in Leiden (Netherlands); Psi-k; NCCR MARVEL (National Centre of Competence in Research-Swiss National Science Foundation) [205602]; Swedish e-Science Research Centre (SeRC); Royal Society; Wallonia-Brussels Federation under European Commission [847587]; NSF [DMR-2219788]; German Research Foundation (DFG) through the NFDI consortium FAIRmat [460197019]; Open Research Data Program of the ETH Board; Vetenskapsradet [2020-05402]; Swedish e-Science Research Centre; Programme "University Excellence Initiatives" of the Ministry of Education, Science and Sports of the Republic of Lithuania [12-001-01-01-01]; EPSRC [EP/T026642/1, EP/T026375/1, EP/P022561/1, EP/T022221/1]; U.S. Department of Energy, Office of Science, Office of Basic Energy Sciences, Materials Sciences and Engineering Division [DE-AC02-05-CH11231]; Materials Project program (KC23MP); European Union [675728, 823830, 720270, 785907, 945539]; Horizon Europe Programme [101093290, 101094651]; CHIPS Metrology Program, part of CHIPS for America, National Institute of Standards and Technology, U.S. Department of Commerce; National Natural Science Foundation of China (NSFC) [62376258]

Tillgänglig från: 2024-08-26 Skapad: 2024-08-26 Senast uppdaterad: 2026-09-08Bibliografiskt granskad
Ingår i avhandling
1. Materials informatics with large scale materials databases: Semantic modeling and data-driven crystal structure generation
Öppna denna publikation i ny flik eller fönster >>Materials informatics with large scale materials databases: Semantic modeling and data-driven crystal structure generation
2026 (Engelska)Licentiatavhandling, sammanläggning (Övrigt vetenskapligt)
Abstract [en]

Materials design has evolved from experimental trial-and-error, to model-based theoretical science and physics-based computational methods, and have now entered the paradigm of data-driven methods. During the past decades physics-based methods such as density functional theory (DFT) has been the driving force of computational materials design, and have been used to produce large sets of materials data by academic groups across the world. Since different databases use different technologies and data formats, the data production has resulted in scattered heterogeneous materials database designs. Data driven design of materials relies on data and methods operating on the data such as machine learning, neural networks, and analysis tools. To enable the full potential of the emerging data operational methods, especially the learning-based methods which commonly improves in correlation to the amount of training data, we need to make the data collectively accessible.

Database integration and interoperability are used to make the data collectively and viably accessible, where ontologies are key to, e.g., make data storages machine interpretable and unification of heterogenous data descriptions. This thesis presents an ontology for units of measures specifically targeting challenges of handling units across databases of computational and experimental data. The ontology is created using definition files part of the property definitions in release 1.2, from the community-driven OPTIMADE standard for a common application programming interface (API) for materials databases. The resulting ontology allows addressing data integration challenges encountered in that effort, which were unsolvable with available tools. These challenges include reference to specific and generalized units that have changed over time, using relevant symbols for different scientific domains, specification of relationships between units, and representation of units not part of System of Units (SI) without defining them in SI units or using SI system conventions.

Developments of structure-to-property machine learning and artificial intelligence (AI) mod-els part of data-driven methods has sped-up traditional physics-based simulation methods. Despite the speed increase of structure-to-property predictions, all possible materials is a massive space which is intractable to screen exhaustively, which leads to the idea of in-verse materials design using property-to-structure prediction. Generative AI models are promising candidates for property-to-structure prediction. Most existing crystal structure generative AI models does not account for symmetry, resulting in generation of high concentration of low-symmetry crystal structures. This thesis presents a generative AI model, capable of generating novel and stable symmetry-based descriptions of crystal structures, which inherently accounts for crystal structure symmetry.

Ort, förlag, år, upplaga, sidor
Linköping: Linköping University Electronic Press, 2026. s. 47
Serie
Linköping Studies in Science and Technology. Licentiate Thesis, ISSN 0280-7971 ; 2038
Nationell ämneskategori
Datavetenskap (datalogi) Artificiell intelligens
Identifikatorer
urn:nbn:se:liu:diva-226733 (URN)10.3384/9789181186741 (DOI)9789181186734 (ISBN)9789181186741 (ISBN)
Presentation
2026-09-11, Nobel (BL32), B-building, Campus Valla, Linköping, 10:15 (Engelska)
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Handledare
Tillgänglig från: 2026-08-14 Skapad: 2026-08-14 Senast uppdaterad: 2026-08-19Bibliografiskt granskad
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