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Extensive qPCR analysis reveals altered gene expression in middle ear mucosa from cholesteatoma patients
The Division of ENT Diseases, CLINTEC, Karolinska Institutet, Stockholm.
The Division of ENT Diseases, CLINTEC, Karolinska Institutet, Stockholm.
Linköping University, Department of Biomedical and Clinical Sciences, Division of Sensory Organs and Communication. Linköping University, Faculty of Medicine and Health Sciences. Region Östergötland, Anaesthetics, Operations and Specialty Surgery Center, Department of Otorhinolaryngology.
Linköping University, Department of Biomedical and Clinical Sciences, Division of Sensory Organs and Communication. Linköping University, Faculty of Medicine and Health Sciences. Region Östergötland, Anaesthetics, Operations and Specialty Surgery Center, Department of Otorhinolaryngology. Faculty of Medicine and Health, Örebro University.ORCID iD: 0000-0002-0122-9259
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2020 (English)In: PLOS ONE, E-ISSN 1932-6203, Vol. 15, no 9, article id e0239161Article in journal (Refereed) Published
Abstract [en]

The middle ear is a small and hard to reach compartment, limiting the amount of tissue that can be extracted and the possibilities for studying the molecular mechanisms behind diseases like cholesteatoma. In this paper 14 reference gene candidates were evaluated in the middle ear mucosa of cholesteatoma patients and two different control tissues. ACTB and GAPDH were shown to be the optimal genes for the normalisation of target gene expression when investigating middle ear mucosa in multiplex qPCR analysis. Validation of reference genes using c-MYC expression confirmed the suitability of ACTB and GAPDH as reference genes and showed an upregulation of c-MYC in middle ear mucosa during cholesteatoma. The occurrence of participants of the innate immunity, TLR2 and TLR4, were analysed in order to compare healthy middle ear mucosa to cholesteatoma. Analysis of TLR2 and TLR4 showed variable results depending on control tissue used, highlighting the importance of selecting relevant control tissue when investigating causes for disease. It is our belief that a consensus regarding reference genes and control tissue will contribute to the comparability and reproducibility of studies within the field.

Place, publisher, year, edition, pages
Public Library of Science , 2020. Vol. 15, no 9, article id e0239161
National Category
Medical Genetics and Genomics
Identifiers
URN: urn:nbn:se:liu:diva-170086DOI: 10.1371/journal.pone.0239161ISI: 000571887500004PubMedID: 32915926Scopus ID: 2-s2.0-85090821947OAI: oai:DiVA.org:liu-170086DiVA, id: diva2:1471450
Note

Funding agencies:  Swedish research councilSwedish Research Council

Available from: 2020-09-29 Created: 2020-09-29 Last updated: 2025-02-10Bibliographically approved
In thesis
1. Middle ear cholesteatoma: Surgical outcome and aspects of the innate immunity
Open this publication in new window or tab >>Middle ear cholesteatoma: Surgical outcome and aspects of the innate immunity
2020 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Cholesteatomas are bone destructive expansions of keratinizing squamous epithelium in the middle ear and temporal bone. Today, surgery is the only treatment. There are several controversies regarding cholesteatomas, including the definition, the pathogenesis and the surgical method. Intense efforts have been made searching for a comprehension of the cholesteatoma process at a cellular and molecular level. Recurrent infections and inflammation seem to be contributing factors for the cholesteatomas to expand. The innate immunity, essential to keep a healthy middle ear environment and to protect the middle ear from intruding pathogens, is therefore a matter of interest.

In this thesis, results are presented from a cohort of cholesteatoma surgeries in Östergötland from a 16-year period. A group of patients also filled in a questionnaire to assess changes in health-related quality of life (HRQoL) after surgery. According to the findings in this thesis, the residual and recurrence frequencies are low, and the hearing and HRQoL are improved in the majority of cases.

This thesis also presents an investigation of the innate immunity in ears with acquired cholesteatoma, in comparison with healthy controls. The expression of mRNA of toll-like receptors 2 and 4, participants of the Janus kinase/signal transducer and activator of transcription pathway, and nitric oxide synthases in middle ear mucosa, were investigated with quantitative polymerase chain reaction. An investigation of nitric oxide (NO) in the middle ear, with chemiluminescence measurements, is also presented.

A derangement of the innate immune system is seen in ears with cholesteatoma, which supports the idea that the innate immunity participates in the cholesteatoma process, though the underlying mechanisms are still unclear. The suggestion of NO production in the middle ear sheds light on NOs possible participation in the healthy middle ear environment.

Place, publisher, year, edition, pages
Linköping: Linköping University Electronic Press, 2020. p. 76
Series
Linköping University Medical Dissertations, ISSN 0345-0082 ; 1747
National Category
Otorhinolaryngology
Identifiers
urn:nbn:se:liu:diva-170087 (URN)10.3384/diss.diva-170087 (DOI)9789179298043 (ISBN)
Public defence
2020-11-13, Berzeliussalen, Building 463, Campus US, Linköping, 13:00 (Swedish)
Opponent
Supervisors
Available from: 2020-09-29 Created: 2020-09-29 Last updated: 2024-01-10Bibliographically approved

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Westerberg, JohannaMäki-Torkko, Elina

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