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Proactive Construction of an Annotated Imaging Database for Artificial Intelligence Training
Linköping University, Department of Health, Medicine and Caring Sciences, Division of Diagnostics and Specialist Medicine. Linköping University, Faculty of Medicine and Health Sciences. Linköping University, Center for Medical Image Science and Visualization (CMIV).ORCID iD: 0000-0001-7250-234X
Linköping University, Department of Science and Technology, Media and Information Technology. Linköping University, Faculty of Science & Engineering. Sectra AB, Tekn Ringen 20, SE-58330 Linkoping, Sweden.ORCID iD: 0000-0002-7014-8874
Linköping University, Department of Science and Technology, Media and Information Technology. Linköping University, Faculty of Science & Engineering. Linköping University, Center for Medical Image Science and Visualization (CMIV). Sectra AB, Tekn Ringen 20, SE-58330 Linkoping, Sweden.ORCID iD: 0000-0002-9368-0177
Linköping University, Department of Biomedical and Clinical Sciences, Division of Neurobiology. Linköping University, Faculty of Medicine and Health Sciences. Region Östergötland, Center for Diagnostics, Clinical pathology. Linköping University, Center for Medical Image Science and Visualization (CMIV).
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2021 (English)In: Journal of digital imaging, ISSN 0897-1889, E-ISSN 1618-727X, Vol. 34, p. 105-115Article in journal (Refereed) Published
Abstract [en]

Artificial intelligence (AI) holds much promise for enabling highly desired imaging diagnostics improvements. One of the most limiting bottlenecks for the development of useful clinical-grade AI models is the lack of training data. One aspect is the large amount of cases needed and another is the necessity of high-quality ground truth annotation. The aim of the project was to establish and describe the construction of a database with substantial amounts of detail-annotated oncology imaging data from pathology and radiology. A specific objective was to be proactive, that is, to support undefined subsequent AI training across a wide range of tasks, such as detection, quantification, segmentation, and classification, which puts particular focus on the quality and generality of the annotations. The main outcome of this project was the database as such, with a collection of labeled image data from breast, ovary, skin, colon, skeleton, and liver. In addition, this effort also served as an exploration of best practices for further scalability of high-quality image collections, and a main contribution of the study was generic lessons learned regarding how to successfully organize efforts to construct medical imaging databases for AI training, summarized as eight guiding principles covering team, process, and execution aspects.

Place, publisher, year, edition, pages
Springer-Verlag New York, 2021. Vol. 34, p. 105-115
Keywords [en]
Artificial intelligence; Annotation; Case collection; Radiology; Pathology
National Category
Radiology, Nuclear Medicine and Medical Imaging
Identifiers
URN: urn:nbn:se:liu:diva-171711DOI: 10.1007/s10278-020-00384-4ISI: 000587960300001PubMedID: 33169211Scopus ID: 2-s2.0-85095841989OAI: oai:DiVA.org:liu-171711DiVA, id: diva2:1505270
Note

Funding Agencies|Linkoping University; Visual Sweden [VS1702]

Available from: 2020-11-30 Created: 2020-11-30 Last updated: 2025-09-05Bibliographically approved
In thesis
1. Designing with Machine Learning in Digital Pathology: Augmenting Medical Specialists through Interaction Design
Open this publication in new window or tab >>Designing with Machine Learning in Digital Pathology: Augmenting Medical Specialists through Interaction Design
2021 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Recent advancements in machine learning (ML) have led to a dramatic increase in AI capabilities for medical diagnostic tasks. Despite technical advances, developers of predictive AI models struggle to integrate their work into routine clinical workflows. Inefficient human-AI interactions, poor sociotechnical fit and a lack of interactive strategies for dealing with the imperfect nature of predictions are known factors contributing to this lack of adoption.

User-centred design methods are typically aimed at discovering and realising desirable qualities in use, pragmatically oriented around finding solutions despite the limitations of material- and human resources. However, existing methods often rely on designers possessing knowledge of suitable interactive metaphors and idioms, as well as skills in evaluating ideas through low-fidelity prototyping and rapid iteration methods—all of which are challenged by the data-driven nature of machine learning and the unpredictable outputs from AI models.

Using a constructive design research approach, my work explores how we might design systems with AI components that aid clinical decision-making in a human-centred and iterative fashion. Findings are derived from experiments and experiences from four exploratory projects conducted in collaboration with professional physicians, all aiming to probe this design space by producing novel interactive systems for or with ML components.

Contributions include identifying practical and theoretical design challenges, suggesting novel interaction strategies for human-AI collaboration, framing ML competence for designers and presenting empirical descriptions of conducted design processes. Specifically, this compilation thesis contains three works that address effective human-machine teaching and two works that address the challenge of designing interactions that afford successful decision-making despite the uncertainty and imperfections inherent in machine predictions.

Finally, two works directly address design-researchers working with ML, arguing for a systematic approach to increase the repertoire available for theoretical annotation and understanding of the properties of ML as a designerly material.

Place, publisher, year, edition, pages
Linköping: Linköping University Electronic Press, 2021
Series
Linköping Studies in Science and Technology. Dissertations, ISSN 0345-7524 ; 2157
National Category
Design Human Computer Interaction
Identifiers
urn:nbn:se:liu:diva-176117 (URN)10.3384/diss.diva-176117 (DOI)978-91-7929-604-9 (ISBN)
Public defence
2021-09-23, K3, Kåkenhus, Campus Norrköping, Norrköping, 09:00 (English)
Opponent
Supervisors
Available from: 2021-08-30 Created: 2021-06-07 Last updated: 2025-02-25Bibliographically approved
2. Artificial Intelligence in Digital Pathology: with a Focus on Breast Cancer
Open this publication in new window or tab >>Artificial Intelligence in Digital Pathology: with a Focus on Breast Cancer
2025 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Breast cancer is the most common cancer among women in Sweden, and pathology is central to diagnosis and treatment planning. Advances in digital pathology, using high-resolution whole-slide images, (WSI), have  enabled the use of AI-based (artificial intelligence) image analysis tools that improves diagnostic efficiency and reproducibility. However, responsible implementation requires careful attention to clinical accountability, data governance and human oversight.

This thesis presents a multimodal evaluation framework and contributes to technical and medical insights to the field. In the first study a research database was constructed to support generalizable AI development, compromising six annotated imaging collections, comprising 754 WSIs and 24,043 pathology annotations, 110 radiology cases and 397 lesion annotations.

One study evaluated a human-in-the-loop (HITL) workflow, when pathologist assess cellproliferation as expressed by Ki-67 from an AI result. Even though AI showed reduced cell-level performance on local data, (F1 score 0.68 compared to 0.83), status agreement for visual estimation of Ki-67 performed significantly worse (Cohen’s κ 0.62) than digital image analysis (κ 0.84)  and HITL (κ 0.76). HITL reduced variability of the Ki-67 error and mitigated key limitations such as tumour heterogeneity, misidentification, and staining variability, while highlighting risks from user handling errors.

Subsequent studies introduced Feature Enhancing Zoom (FEZ), a visualization technique that amplifies stain patterns at low magnification. In a study with eight pathologists, FEZ improved task efficiency by 15% without compromising accuracy. A usability study with 16 pathologists confirmed high ratings, especially for stains requiring small object identification.

Finally, a methodology was evaluated to mitigate domain restraints during clinical implementation of a pretrained AI model for detecting metastases in lymph nodes. A locally curated dataset of 396 cases (4,462 WSIs) was used, with slides labelled by surgical procedure and lesion presence. Results showed that surgical procedure affects model performance, and retraining significantly improved generalization and thus reducing false positive predictions.

In summary, this thesis demonstrates how AI and digital pathology can be integrated into clinical workflows to enhance diagnostic precision.

Place, publisher, year, edition, pages
Linköping: Linköping University Electronic Press, 2025. p. 104
Series
Linköping University Medical Dissertations, ISSN 0345-0082 ; 1991
Keywords
Digital pathology, Computational pathology, Medical imaging, Human-in-the-loop, Artificial intelligence, Domain shift, Visualization, Breast cancer
National Category
Medical Imaging
Identifiers
urn:nbn:se:liu:diva-217439 (URN)10.3384/978918118609 (DOI)9789181181593 (ISBN)9789181181609 (ISBN)
Public defence
2025-10-03, Belladonna, building 511; You are invited to a Zoom webinar! When: Oct 3, 2025 08:00 AM Stockholm Topic: Disputation inom medicinsk vetenskap: Anna Bodén Join from PC, Mac, iPad, or Android: https://liu-se.zoom.us/j/66078183785?pwd=iRGS1gdKYQKtEkLLbsA5XDoJwhAN7g.1 Passcode:765240 Phone one-tap: +46850539728,,66078183785#,,,,*765240# Sweden +46844682488,,66078183785#,,,,*765240# Sweden Join via audio: +46 850 539 728 Sweden +46 8 4468 2488 Sweden Webinar ID: 660 7818 3785 Passcode: 765240 International numbers available: https://liu-se.zoom.us/u/ccOcMmLnad Join from an H.323/SIP room system: H.323: 109.105.112.236 or 109.105.112.235 Meeting ID: 660 7818 3785 Passcode: 765240 SIP: 66078183785@109.105.112.236 or 66078183785@109.105.112.235 Passcode: 765240, Campus US, Linköping, 09:00 (English)
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Note

Funding: This work has been supported by grants from ALF and RFoU through Region Östergötland, as well as funding from the Swedish Breast Cancer Association, Vinnova, and Visual Sweden.

Available from: 2025-09-05 Created: 2025-09-05 Last updated: 2025-09-17Bibliographically approved

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Bivik Stadler, Caroline

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Division of Diagnostics and Specialist MedicineFaculty of Medicine and Health SciencesCenter for Medical Image Science and Visualization (CMIV)Media and Information TechnologyFaculty of Science & EngineeringDivision of NeurobiologyClinical pathologyDivision of Inflammation and InfectionDepartment of Radiology in LinköpingDivision of Clinical Chemistry
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