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Disentangling key species interactions in diverse and heterogeneous communities: A Bayesian sparse modelling approach
Univ Wyoming, WY 82071 USA.
Univ Wyoming, WY 82071 USA.
Univ Queensland, Australia.
Univ Oregon, OR 97403 USA; Univ Oregon, OR 97403 USA.
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2022 (English)In: Ecology Letters, ISSN 1461-023X, E-ISSN 1461-0248, Vol. 25, no 5, p. 1263-1276Article in journal (Refereed) Published
Abstract [en]

Modelling species interactions in diverse communities traditionally requires a prohibitively large number of species-interaction coefficients, especially when considering environmental dependence of parameters. We implemented Bayesian variable selection via sparsity-inducing priors on non-linear species abundance models to determine which species interactions should be retained and which can be represented as an average heterospecific interaction term, reducing the number of model parameters. We evaluated model performance using simulated communities, computing out-of-sample predictive accuracy and parameter recovery across different input sample sizes. We applied our method to a diverse empirical community, allowing us to disentangle the direct role of environmental gradients on species intrinsic growth rates from indirect effects via competitive interactions. We also identified a few neighbouring species from the diverse community that had non-generic interactions with our focal species. This sparse modelling approach facilitates exploration of species interactions in diverse communities while maintaining a manageable number of parameters.

Place, publisher, year, edition, pages
Wiley , 2022. Vol. 25, no 5, p. 1263-1276
Keywords [en]
coexistence; environmental gradients; pairwise interactions; parameter shrinkage; plant fecundity; species diversity
National Category
Ecology
Identifiers
URN: urn:nbn:se:liu:diva-182916DOI: 10.1111/ele.13977ISI: 000749498400001PubMedID: 35106910OAI: oai:DiVA.org:liu-182916DiVA, id: diva2:1638337
Note

Funding Agencies|NSF EPSCoRNational Science Foundation (NSF)NSF - Office of the Director (OD) [EPS-2019528]; Australian Research CouncilAustralian Research Council [DP140100574]; VetenskapsradetSwedish Research Council [2017-05245]; European Social FundEuropean Social Fund (ESF) [RYC-2017-23666]; Ministerio de Economia y CompetitividadSpanish Government; Deutsches Zentrum fur integrative Biodiversitatsforschung Halle-Jena-Leipzig [FZT 118, 02548816]

Available from: 2022-02-16 Created: 2022-02-16 Last updated: 2023-04-06Bibliographically approved

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Barabas, György

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Citation style
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