Comprehensive Target Screening and Cellular Profiling of the Cancer-Active Compound b-AP15 Indicate Abrogation of Protein Homeostasis and Organelle Dysfunction as the Primary Mechanism of ActionShow others and affiliations
2022 (English)In: Frontiers in Oncology, E-ISSN 2234-943X, Vol. 12, article id 852980
Article in journal (Refereed) Published
Abstract [en]
Dienone compounds have been demonstrated to display tumor-selective anti-cancer activity independently of the mutational status of TP53. Previous studies have shown that cell death elicited by this class of compounds is associated with inhibition of the ubiquitin-proteasome system (UPS). Here we extend previous findings by showing that the dienone compound b-AP15 inhibits proteasomal degradation of long-lived proteins. We show that exposure to b-AP15 results in increased association of the chaperones VCP/p97/Cdc48 and BAG6 with proteasomes. Comparisons between the gene expression profile generated by b-AP15 to those elicited by siRNA showed that knock-down of the proteasome-associated deubiquitinase (DUB) USP14 is the closest related to drug response. USP14 is a validated target for b-AP15 and we show that b-AP15 binds covalently to two cysteines, Cys203 and Cys257, in the ubiquitin-binding pocket of the enzyme. Consistent with this, deletion of USP14 resulted in decreased sensitivity to b-AP15. Targeting of USP14 was, however, found to not fully account for the observed proteasome inhibition. In search for additional targets, we utilized genome-wide CRISPR/Cas9 library screening and Proteome Integral Solubility Alteration (PISA) to identify mechanistically essential genes and b-AP15 interacting proteins respectively. Deletion of genes encoding mitochondrial proteins decreased the sensitivity to b-AP15, suggesting that mitochondrial dysfunction is coupled to cell death induced by b-AP15. Enzymes known to be involved in Phase II detoxification such as aldo-ketoreductases and glutathione-S-transferases were identified as b-AP15-targets using PISA. The finding that different exploratory approaches yielded different results may be explained in terms of a “target” not necessarily connected to the “mechanism of action” thus highlighting the importance of a holistic approach in the identification of drug targets. We conclude that b-AP15, and likely also other dienone compounds of the same class, affect protein degradation and proteasome function at more than one level.
Place, publisher, year, edition, pages
Frontiers Media SA , 2022. Vol. 12, article id 852980
Keywords [en]
b-AP15, proteasome inhibitor, mitochondrial dysfunction, dienone, Michael acceptor, target screening
National Category
Cancer and Oncology
Identifiers
URN: urn:nbn:se:liu:diva-184797DOI: 10.3389/fonc.2022.852980ISI: 000876131200001PubMedID: 35530310OAI: oai:DiVA.org:liu-184797DiVA, id: diva2:1656431
Note
Funding: This research was funded by Cancerfonden, Vetenskapsrådet (grant 2018-02570) and Radiumhemmets forskningsfonder. CFG acknowledges support from the National Genomics Infrastructure, SNIC (project 2017-7-265), and the Uppsala Multidisciplinary Center for Advanced Computational Science (UPPMAX). RZ acknowledges the Knut and Alice Wallenberg Foundation (grant KAW 2015.0063).
2022-05-052022-05-052024-04-15Bibliographically approved
In thesis