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A comprehensive dynamic model of the adipocyte
Linköping University, Department of Biomedical Engineering, Division of Biomedical Engineering. Linköping University, Faculty of Science & Engineering.ORCID iD: 0000-0002-9058-7049
2022 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

The adipose tissue contributes to energy homeostasis by storing excess energy as triglycerides when the energy status is high, and by releasing fatty acids when the energy status is low. In addition to the involvement in energy homeostasis, the adipose tissue also has a function of hormonal control exerted by the release of adipokines such as adiponectin. Dysregulations in the signaling pathways of these two functions are involved in the development of type 2 diabetes and related complications such as cardiovascular disease. These signaling pathways are too complex to be fully unraveled without a systematic framework, such as mathematical modeling. Previous modeling works have investigated the insulin signaling pathways leading to glucose uptake in primary human adipocytes in response to insulin stimulation. Furthermore, experimental works have investigated how adrenergic stimuli and varying concentrations of intracellular mediators triggers the release of adiponectin from 3T3‐L1 adipocytes, and how insulin and adrenergic stimuli influence lipolysis in primary human adipocytes. Additionally, large‐scale phosphoproteomic data for insulin signaling in 3T3‐L1 adipocytes have become available. However, these experimental data had not been systematically investigated using mathematical modeling. In this thesis, I have used mathematical modeling to study three aspects of the adipocyte: 1) adiponectin release, 2) lipolysis, and 3) intracellular crosstalk between the pathways of glucose uptake, lipolysis, and adiponectin release. Finally, I have developed a new method for automatic model expansion.

In Paper I, we used mathematical modeling to test a hypothesis of the mechanisms controlling adiponectin exocytosis in 3T3‐L1 cells. We found that the hypothesis had to be revised in order to be in agreement with the available experimental data. We used the revised model to quantify the balance between the exocytosis and the endocytosis, and to predict the amount of released adiponectin in response to additional experiments.

In Paper II, we extended the adiponectin exocytosis model from Paper I with mechanisms for how extracellular adrenergic stimulation trigger adiponectin exocytosis. We also used the model to quantify the effect of a decreased amount of β3‐adrenergic receptors on the adrenergically stimulated adiponectin exocytosis.

In Paper III, we tested a hypothesis of the impact of, and crosstalk between, insulin and adrenergic stimulation on the lipolysis. We used the model to test three different actions by insulin on the lipolysis, and to predict fatty acid release in vivo in response to stimulations with epinephrine and insulin.

In Paper IV, we combined the models from Paper I‐III with a previously published model for glucose uptake. We then used the connected model as a core model to which additional signaling data could be added using a new method for automatic model expansion. This new method incorporates prior‐knowledge and large‐scale data to expand a core model with thousands of additional phosphosites into a comprehensive model of the adipocyte. The comprehensive expanded model can propagate the effect of type 2 diabetes from the core model to a substantial part of the phosphoproteome, and could thus facilitate the finding of new drug targets or treatment regimens for type 2 diabetic patients.

Place, publisher, year, edition, pages
Linköping: Linköping University Electronic Press, 2022. , p. 79
Series
Linköping Studies in Science and Technology. Dissertations, ISSN 0345-7524 ; 2226
National Category
Bioinformatics and Computational Biology
Identifiers
URN: urn:nbn:se:liu:diva-184876DOI: 10.3384/9789179293130ISBN: 9789179293123 (print)ISBN: 9789179293130 (electronic)OAI: oai:DiVA.org:liu-184876DiVA, id: diva2:1657062
Public defence
2022-06-10, Belladonna, Building 511, Campus US, Linköping, 14:00 (English)
Opponent
Supervisors
Available from: 2022-05-09 Created: 2022-05-09 Last updated: 2025-02-07Bibliographically approved
List of papers
1. Mathematical modeling of white adipocyte exocytosis predicts adiponectin secretion and quantifies the rates of vesicle exo- and endocytosis
Open this publication in new window or tab >>Mathematical modeling of white adipocyte exocytosis predicts adiponectin secretion and quantifies the rates of vesicle exo- and endocytosis
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2017 (English)In: Journal of Biological Chemistry, ISSN 0021-9258, E-ISSN 1083-351X, Vol. 292, no 49, p. 20032-20043Article in journal (Refereed) Published
Abstract [en]

Adiponectin is a hormone secreted from white adipocytes and takes part in the regulation of several metabolic processes. Although the pathophysiological importance of adiponectin has been thoroughly investigated, the mechanisms controlling its release are only partly understood. We have recently shown that adiponectin is secreted via regulated exocytosis of adiponectin-containing vesicles, that adiponectin exocytosis is stimulated by cAMP-dependent mechanisms, and that Ca2+ and ATP augment the cAMP-triggered secretion. However, much remains to be discovered regarding the molecular and cellular regulation of adiponectin release. Here, we have used mathematical modeling to extract detailed information contained within our previously obtained high-resolution patch-clamp time-resolved capacitance recordings to produce the first model of adiponectin exocytosis/secretion that combines all mechanistic knowledge deduced from electrophysiological experimental series. This model demonstrates that our previous understanding of the role of intracellular ATP in the control of adiponectin exocytosis needs to be revised to include an additional ATP-dependent step. Validation of the model by introduction of data of secreted adiponectin yielded a very close resemblance between the simulations and experimental results. Moreover, we could show that Ca2+-dependent adiponectin endocytosis contributes to the measured capacitance signal, and we were able to predict the contribution of endocytosis to the measured exocytotic rate under different experimental conditions. In conclusion, using mathematical modeling of published and newly generated data, we have obtained estimates of adiponectin exo- and endocytosis rates, and we have predicted adiponectin secretion. We believe that our model should have multiple applications in the study of metabolic processes and hormonal control thereof.

Place, publisher, year, edition, pages
AMER SOC BIOCHEMISTRY MOLECULAR BIOLOGY INC, 2017
Keywords
adipocyte; adipokine; adiponectin; electrophysiology; endocytosis; exocytosis; mathematical modeling
National Category
Control Engineering
Identifiers
urn:nbn:se:liu:diva-143907 (URN)10.1074/jbc.M117.801225 (DOI)000417696400009 ()28972187 (PubMedID)
Note

Funding Agencies|Swedish Diabetes Foundation [DIA2015-062]; Goljes Memory Fund; Swedish Medical Research Council [2010-2656, 2013-7107]; AstraZeneca; European Union [607842]

Available from: 2018-01-02 Created: 2018-01-02 Last updated: 2023-12-28
2. A systems biology analysis of adrenergically stimulated adiponectin exocytosis in white adipocytes
Open this publication in new window or tab >>A systems biology analysis of adrenergically stimulated adiponectin exocytosis in white adipocytes
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2021 (English)In: Journal of Biological Chemistry, ISSN 0021-9258, E-ISSN 1083-351X, Vol. 297, no 5, article id 101221Article in journal (Refereed) Published
Abstract [en]

Circulating levels of the adipocyte hormone adiponectin are typically reduced in obesity, and this deficiency has been linked to metabolic diseases. It is thus important to understand the mechanisms controlling adiponectin exocytosis. This understanding is hindered by the high complexity of both the available data and the underlying signaling network. To deal with this complexity, we have previously investigated how different intracellular concentrations of Ca2+, cAMP, and ATP affect adiponectin exocytosis, using both patch-clamp recordings and systems biology mathematical modeling. Recent work has shown that adiponectin exocytosis is physiologically triggered via signaling pathways involving adrenergic beta(3) receptors (beta(3)ARs). Therefore, we developed a mathematical model that also includes adiponectin exocytosis stimulated by extracellular epinephrine or the beta(3)AR agonist CL 316243. Our new model is consistent with all previous patch-clamp data as well as new data (collected from stimulations with a combination of the intracellular mediators and extracellular adrenergic stimuli) and can predict independent validation data. We used this model to perform new in silico experiments where corresponding wet lab experiments would be difficult to perform. We simulated adiponectin exocytosis in single cells in response to the reduction of beta(3)ARs that is observed in adipocytes from animals with obesity-induced diabetes. Finally, we used our model to investigate intracellular dynamics and to predict both cAMP levels and adiponectin release by scaling the model from single-cell to a population of cells-predictions corroborated by experimental data. Our work brings us one step closer to understanding the intricate regulation of adiponectin exocytosis.

Place, publisher, year, edition, pages
Elsevier, 2021
National Category
Bioinformatics and Computational Biology
Identifiers
urn:nbn:se:liu:diva-183265 (URN)10.1016/j.jbc.2021.101221 (DOI)000755365700005 ()34597667 (PubMedID)
Note

Funding Agencies|Swedish Diabetes Foundation [DIA2017-273, DIA2018-358]; Swedish Research CouncilSwedish Research CouncilEuropean Commission [2019-01239, 2018-05418, 2018-03319, 2019-03767, 2013-7107]; CENIIT [15.09, 20.08]; Swedish Foundation for Strategic ResearchSwedish Foundation for Strategic Research [ITM17-0245]; SciLifeLab; KAW [2020.0182]; Ake Winbergs stiftelse [M19-0449]; H2020 project PRECISE4Q [777107]; Swedish Fund for Research without Animal Experiments [F2019-0010]; ELLIIT; VisualSweden; VINNOVAVinnova [2020-04711]

Available from: 2022-03-08 Created: 2022-03-08 Last updated: 2025-02-07
3. A systems biology analysis of lipolysis and fatty acid release from adipocytes in vitro and from adipose tissue in vivo
Open this publication in new window or tab >>A systems biology analysis of lipolysis and fatty acid release from adipocytes in vitro and from adipose tissue in vivo
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2021 (English)In: PLOS ONE, E-ISSN 1932-6203, Vol. 16, no 12, article id e0261681Article in journal (Refereed) Published
Abstract [en]

Lipolysis and the release of fatty acids to supply energy fuel to other organs, such as between meals, during exercise, and starvation, are fundamental functions of the adipose tissue. The intracellular lipolytic pathway in adipocytes is activated by adrenaline and noradrenaline, and inhibited by insulin. Circulating fatty acids are elevated in type 2 diabetic individuals. The mechanisms behind this elevation are not fully known, and to increase the knowledge a link between the systemic circulation and intracellular lipolysis is key. However, data on lipolysis and knowledge from in vitro systems have not been linked to corresponding in vivo data and knowledge in vivo. Here, we use mathematical modelling to provide such a link. We examine mechanisms of insulin action by combining in vivo and in vitro data into an integrated mathematical model that can explain all data. Furthermore, the model can describe independent data not used for training the model. We show the usefulness of the model by simulating new and more challenging experimental setups in silico, e.g. the extracellular concentration of fatty acids during an insulin clamp, and the difference in such simulations between individuals with and without type 2 diabetes. Our work provides a new platform for model-based analysis of adipose tissue lipolysis, under both non-diabetic and type 2 diabetic conditions.

Place, publisher, year, edition, pages
San Fransisco, United States: Public Library of Science, 2021
National Category
Bioinformatics and Computational Biology
Identifiers
urn:nbn:se:liu:diva-184877 (URN)10.1371/journal.pone.0261681 (DOI)000773555700045 ()34972146 (PubMedID)2-s2.0-85122037804 (Scopus ID)
Note

Funding: PS acknowledges support from Linköping University, the Swedish Diabetes Fund (a 3-years program; https://www.diabetes.se/diabetesfonden/), and the Swedish Research Council (a 5-years program; https://www.vr.se/). EN acknowledges support from the Swedish Research Council (Dnr 2019-03767), the Heart and Lung Foundation (https://www.hjart-lungfonden.se/), CENIIT (20.08; http://ceniit.lith.liu.se/en/), and Åke Wibergs Stiftelse (M19-0449; https://akewiberg.se/). GC acknowledges support from the Swedish Research Council (Dnr 2018-05418, 2018-03319), Swedish Foundation for Strategic Research (ITM17-0245; https://strategiska.se/), SciLifeLab and KAW (2020.0182; https://www.scilifelab.se/), Horizon 2020 (PRECISE4Q, 777107; https://ec.europa.eu/programmes/horizon2020/), CENIIT (15.09), ELLIIT (https://www.lu.se/forskning/starka-forskningsmiljoer/strategiskaforskningsomraden/elliit), and the Swedish Fund for Research without Animal Experiments (https://forskautandjurforsok.se/swedish-fund-forresearch-without-animal-experiments/).

Available from: 2022-05-09 Created: 2022-05-09 Last updated: 2025-02-07Bibliographically approved
4. A comprehensive mechanistic model of adipocyte signaling with layers of confidence
Open this publication in new window or tab >>A comprehensive mechanistic model of adipocyte signaling with layers of confidence
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2022 (English)Manuscript (preprint) (Other academic)
Abstract [en]

Adipocyte cellular signaling, normally and in type 2 diabetes, is far from fully studied. We have earlier developed detailed dynamic mathematical models for some well-studied, and partially overlapping, signaling pathways in adipocytes. Still, these models only cover a fraction of the total cellular response. For a broader coverage of the response, large-scale phosphoproteomic data is key. There exists such data for the insulin response of adipocytes, as well as prior knowledge on possible protein-protein interactions associated with a confidence level. However, methods to combine detailed dynamic models with large-scale data, using information about the confidence of included interactions, are lacking. In our new method, we first establish a core model by connecting our partially overlapping models of adipocyte cellular signaling with focus on: 1) lipolysis and fatty acid release, 2) glucose uptake, and 3) the release of adiponectin. We use the phosphoproteome data and prior knowledge to identify phosphosites adjacent to the core model, and then try to add the adjacent phosphosites to the model. The additions of the adjacent phosphosites is tested in a parallel, pairwise approach with low computation time. We then iteratively collect the accepted additions into a layer, and use the newly added layer to find new adjacent phosphosites. We find that the first 15 layers (60 added phosphosites) with the highest confidence can correctly predict independent inhibitor-data (70-90 % correct), and that this ability decrease when we add layers of decreasing confidence. In total, 60 layers (3926 phosphosites) can be added to the model and still keep predictive ability. Finally, we use the comprehensive adipocyte model to simulate systems-wide alterations in adipocytes in type 2 diabetes. This new method provide a tool to create large models that keeps track of varying confidence.Competing Interest StatementThe authors have declared no competing interest.

National Category
Bioinformatics and Computational Biology
Identifiers
urn:nbn:se:liu:diva-184907 (URN)10.1101/2022.03.11.483974 (DOI)
Available from: 2022-05-11 Created: 2022-05-11 Last updated: 2025-02-07Bibliographically approved

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