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Brain tumor segmentation using synthetic MR images - A comparison of GANs and diffusion models
Linköping University, Department of Biomedical Engineering, Division of Biomedical Engineering. Linköping University, Faculty of Science & Engineering. Linköping University, Center for Medical Image Science and Visualization (CMIV).
Eigenvision, Malmö, Sweden.
Linköping University, Faculty of Medicine and Health Sciences. Linköping University, Center for Medical Image Science and Visualization (CMIV). Region Östergötland, Center for Diagnostics, Department of Radiology in Linköping. Linköping University, Department of Health, Medicine and Caring Sciences, Division of Diagnostics and Specialist Medicine.ORCID iD: 0000-0002-8857-5698
Linköping University, Department of Biomedical Engineering, Division of Biomedical Engineering. Linköping University, Faculty of Science & Engineering. Linköping University, Center for Medical Image Science and Visualization (CMIV). Linköping University, Department of Computer and Information Science, The Division of Statistics and Machine Learning.ORCID iD: 0000-0001-7061-7995
2024 (English)In: Scientific Data, E-ISSN 2052-4463, Vol. 11, no 1, article id 259Article in journal (Refereed) Published
Abstract [en]

Large annotated datasets are required for training deep learning models, but in medical imaging data sharing is often complicated due to ethics, anonymization and data protection legislation. Generative AI models, such as generative adversarial networks (GANs) and diffusion models, can today produce very realistic synthetic images, and can potentially facilitate data sharing. However, in order to share synthetic medical images it must first be demonstrated that they can be used for training different networks with acceptable performance. Here, we therefore comprehensively evaluate four GANs (progressive GAN, StyleGAN 1–3) and a diffusion model for the task of brain tumor segmentation (using two segmentation networks, U-Net and a Swin transformer). Our results show that segmentation networks trained on synthetic images reach Dice scores that are 80%–90% of Dice scores when training with real images, but that memorization of the training images can be a problem for diffusion models if the original dataset is too small. Our conclusion is that sharing synthetic medical images is a viable option to sharing real images, but that further work is required. The trained generative models and the generated synthetic images are shared on AIDA data hub.

Place, publisher, year, edition, pages
Nature Publishing Group, 2024. Vol. 11, no 1, article id 259
Keywords [en]
Deep learning, brain tumor, magnetic resonance imaging, synthetic images, generative adversarial networks, diffusion models
National Category
Radiology, Nuclear Medicine and Medical Imaging Medical Imaging
Identifiers
URN: urn:nbn:se:liu:diva-201435DOI: 10.1038/s41597-024-03073-xISI: 001177063000006PubMedID: 38424097Scopus ID: 2-s2.0-85186294143OAI: oai:DiVA.org:liu-201435DiVA, id: diva2:1843384
Funder
Vinnova, 2021-01954Vinnova, 2021-01420Åke Wiberg Foundation, M22-0088
Note

Funding Agencies|ITEA/VINNOVA project ASSIST [2021-01420]; LiU Cancer; VINNOVA AIDA [M22-0088]; Ake Wiberg foundation; Wallenberg Center for Molecular Medicine as an associated clinical fellow;  [2021-01954]

Available from: 2024-03-09 Created: 2024-03-09 Last updated: 2025-02-09Bibliographically approved

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Akbar, Muhammad UsmanBlystad, IdaEklund, Anders

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Akbar, Muhammad UsmanBlystad, IdaEklund, Anders
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Division of Biomedical EngineeringFaculty of Science & EngineeringCenter for Medical Image Science and Visualization (CMIV)Faculty of Medicine and Health SciencesDepartment of Radiology in LinköpingDivision of Diagnostics and Specialist MedicineThe Division of Statistics and Machine Learning
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Scientific Data
Radiology, Nuclear Medicine and Medical ImagingMedical Imaging

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CiteExportLink to record
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