liu.seSearch for publications in DiVA
Change search
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • oxford
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf
Developments and applications of the OPTIMADE API for materials discovery, design, and data exchange
UCLouvain, Belgium; Matgenix SRL, Belgium.
Ecole Polytech Fed Lausanne, Switzerland.
Vilnius Univ, Lithuania.
SINTEF, Norway.
Show others and affiliations
2024 (English)In: Digital Discovery, E-ISSN 2635-098X, Vol. 3, no 8, p. 1509-1533Article in journal (Refereed) Published
Abstract [en]

The Open Databases Integration for Materials Design (OPTIMADE) application programming interface (API) empowers users with holistic access to a growing federation of databases, enhancing the accessibility and discoverability of materials and chemical data. Since the first release of the OPTIMADE specification (v1.0), the API has undergone significant development, leading to the v1.2 release, and has underpinned multiple scientific studies. In this work, we highlight the latest features of the API format, accompanying software tools, and provide an update on the implementation of OPTIMADE in contributing materials databases. We end by providing several use cases that demonstrate the utility of the OPTIMADE API in materials research that continue to drive its ongoing development. The Open Databases Integration for Materials Design (OPTIMADE) application programming interface (API) empowers users with holistic access to a federation of databases, enhancing the accessibility and discoverability of materials and chemical data.

Place, publisher, year, edition, pages
ROYAL SOC CHEMISTRY , 2024. Vol. 3, no 8, p. 1509-1533
National Category
Computer Engineering
Identifiers
URN: urn:nbn:se:liu:diva-206760DOI: 10.1039/d4dd00039kISI: 001253257300001PubMedID: 39118978OAI: oai:DiVA.org:liu-206760DiVA, id: diva2:1892371
Note

Funding Agencies|CECAM in Lausanne (Switzerland); Lorentz Center in Leiden (Netherlands); Psi-k; NCCR MARVEL (National Centre of Competence in Research-Swiss National Science Foundation) [205602]; Swedish e-Science Research Centre (SeRC); Royal Society; Wallonia-Brussels Federation under European Commission [847587]; NSF [DMR-2219788]; German Research Foundation (DFG) through the NFDI consortium FAIRmat [460197019]; Open Research Data Program of the ETH Board; Vetenskapsradet [2020-05402]; Swedish e-Science Research Centre; Programme "University Excellence Initiatives" of the Ministry of Education, Science and Sports of the Republic of Lithuania [12-001-01-01-01]; EPSRC [EP/T026642/1, EP/T026375/1, EP/P022561/1, EP/T022221/1]; U.S. Department of Energy, Office of Science, Office of Basic Energy Sciences, Materials Sciences and Engineering Division [DE-AC02-05-CH11231]; Materials Project program (KC23MP); European Union [675728, 823830, 720270, 785907, 945539]; Horizon Europe Programme [101093290, 101094651]; CHIPS Metrology Program, part of CHIPS for America, National Institute of Standards and Technology, U.S. Department of Commerce; National Natural Science Foundation of China (NSFC) [62376258]

Available from: 2024-08-26 Created: 2024-08-26 Last updated: 2026-09-08Bibliographically approved
In thesis
1. Materials informatics with large scale materials databases: Semantic modeling and data-driven crystal structure generation
Open this publication in new window or tab >>Materials informatics with large scale materials databases: Semantic modeling and data-driven crystal structure generation
2026 (English)Licentiate thesis, comprehensive summary (Other academic)
Abstract [en]

Materials design has evolved from experimental trial-and-error, to model-based theoretical science and physics-based computational methods, and have now entered the paradigm of data-driven methods. During the past decades physics-based methods such as density functional theory (DFT) has been the driving force of computational materials design, and have been used to produce large sets of materials data by academic groups across the world. Since different databases use different technologies and data formats, the data production has resulted in scattered heterogeneous materials database designs. Data driven design of materials relies on data and methods operating on the data such as machine learning, neural networks, and analysis tools. To enable the full potential of the emerging data operational methods, especially the learning-based methods which commonly improves in correlation to the amount of training data, we need to make the data collectively accessible.

Database integration and interoperability are used to make the data collectively and viably accessible, where ontologies are key to, e.g., make data storages machine interpretable and unification of heterogenous data descriptions. This thesis presents an ontology for units of measures specifically targeting challenges of handling units across databases of computational and experimental data. The ontology is created using definition files part of the property definitions in release 1.2, from the community-driven OPTIMADE standard for a common application programming interface (API) for materials databases. The resulting ontology allows addressing data integration challenges encountered in that effort, which were unsolvable with available tools. These challenges include reference to specific and generalized units that have changed over time, using relevant symbols for different scientific domains, specification of relationships between units, and representation of units not part of System of Units (SI) without defining them in SI units or using SI system conventions.

Developments of structure-to-property machine learning and artificial intelligence (AI) mod-els part of data-driven methods has sped-up traditional physics-based simulation methods. Despite the speed increase of structure-to-property predictions, all possible materials is a massive space which is intractable to screen exhaustively, which leads to the idea of in-verse materials design using property-to-structure prediction. Generative AI models are promising candidates for property-to-structure prediction. Most existing crystal structure generative AI models does not account for symmetry, resulting in generation of high concentration of low-symmetry crystal structures. This thesis presents a generative AI model, capable of generating novel and stable symmetry-based descriptions of crystal structures, which inherently accounts for crystal structure symmetry.

Place, publisher, year, edition, pages
Linköping: Linköping University Electronic Press, 2026. p. 47
Series
Linköping Studies in Science and Technology. Licentiate Thesis, ISSN 0280-7971 ; 2038
National Category
Computer Sciences Artificial Intelligence
Identifiers
urn:nbn:se:liu:diva-226733 (URN)10.3384/9789181186741 (DOI)9789181186734 (ISBN)9789181186741 (ISBN)
Presentation
2026-09-11, Nobel (BL32), B-building, Campus Valla, Linköping, 10:15 (English)
Opponent
Supervisors
Available from: 2026-08-14 Created: 2026-08-14 Last updated: 2026-08-19Bibliographically approved
2.
The record could not be found. The reason may be that the record is no longer available or you may have typed in a wrong id in the address field.

Open Access in DiVA

fulltext(3909 kB)143 downloads
File information
File name FULLTEXT01.pdfFile size 3909 kBChecksum SHA-512
5fe5042eb4fd4d12c99b7d88f6784b385b7d83042a4c1b1177bde1a43707869e2485b99c2c53f002fd68715840829efd2702002d88af8de8a9930cb7d3cfc530
Type fulltextMimetype application/pdf

Other links

Publisher's full textPubMed

Authority records

Andersson, OskarArmiento, Rickard

Search in DiVA

By author/editor
Andersson, OskarArmiento, Rickard
By organisation
Theoretical PhysicsFaculty of Science & Engineering
In the same journal
Digital Discovery
Computer Engineering

Search outside of DiVA

GoogleGoogle Scholar
Total: 144 downloads
The number of downloads is the sum of all downloads of full texts. It may include eg previous versions that are now no longer available

doi
pubmed
urn-nbn

Altmetric score

doi
pubmed
urn-nbn
Total: 179 hits
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • oxford
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf