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Microcontact Printing for Protein Microarray Applications
Linköping University, Department of Physics, Measurement Technology, Biology and Chemistry. Linköping University, The Institute of Technology.
2004 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

This thesis introduces the microcontact printing (μCP) method to pattern and tailor the desired substrates for protein microarray applications. The ink molecules used to create the patterns, hydrophobic barriers, are tetraalkyl ammonium salt, polycationic polymers and oligo(ethylene glycol)-terminated self-assembled monolayers. The hydrophobicityof the printed barriers facilitates pinning of aqueous protein droplets in desired areas thereby promoting protein ligand immobilization.

The characterizations of the printed microstructures (barriers) have been exploited by using a range of surface analytical methods including microscopic wetting, imaging null ellipsometry, atomic force microscopy (AFM), X-ray photoelectron spectroscopy (XPS), Fourier transform infrared reflection-absorption spectroscopy (FTIRAS) and fluorescence microscopy. These techniques reveal that the intrinsic property of the ink molecules and the difference in the interfacial free energies of the ink solutions and thepoly(dimethylsiloxane) (PDMS) stamp lead to the different morphologies at the printed patterns.

Several strategies have been employed to remove or passivate the barriers after protein ligand immobilization in order to reduce the nonspecific interaction between the protein analytes and hydrophobic barriers.

Protein ligand immobilization has been facilitated by using a piezo-dispenser. The biospecific interactions between the protein ligands and their counterparts are monitored by surface plasmon microscopy (SPM). The aim of this study is to demonstrate the generality of using microcontact printing to create protein microarrays for high throughput applications.

Place, publisher, year, edition, pages
Linköping: Linköping University , 2004. , p. 43
Series
Linköping Studies in Science and Technology. Dissertations, ISSN 0345-7524 ; 886
National Category
Physical Chemistry
Identifiers
URN: urn:nbn:se:liu:diva-179539Libris ID: 9615886ISBN: 9173739804 (print)OAI: oai:DiVA.org:liu-179539DiVA, id: diva2:1596903
Public defence
2004-09-15, hörsal Planck, Fysikhuset, Linköpings universitet, Linköping, 10:15
Opponent
Note

All or some of the partial works included in the dissertation are not registered in DIVA and therefore not linked in this post.

Available from: 2021-09-23 Created: 2021-09-23 Last updated: 2023-02-24Bibliographically approved
List of papers
1. Reversible hydrophobic barriers introduced by microcontact printing: Application to protein microarrays
Open this publication in new window or tab >>Reversible hydrophobic barriers introduced by microcontact printing: Application to protein microarrays
2004 (English)In: Microchimica Acta, ISSN 0026-3672, E-ISSN 1436-5073, Vol. 146, no 3-4, p. 193-205Article in journal (Refereed) Published
Abstract [en]

Microcontact printing (µCP) has been used to introduce temporary hydrophobic barriers on carboxymethylated dextran (CMD) hydrogels on gold. Among the investigated types of inks, tetraoctadecylammonium bromide (TOAB), electrostatically bound to the CMD layer, provided the most well-defined features both with respect to pattern-definition and reversibility upon exposure to a regeneration solution. The printed patterns were characterized by atomic force microscopy (AFM), scanning electron microscopy (SEM), microscopic wetting and imaging null ellipsometry to explore the influence of concentration of ink solution and contact time on the appearance of the printed layer. AFM revealed that the printed TOAB molecules aggregated into clusters rather than into a homogeneous mono- or multilayer on the CMD hydrogel. It was also observed that printed areas of TOAB that are larger than 25?µm are inhomogeneous most likely because of an edge transfer lithography (ETL) mechanism. A protein model system based on Protein A-rabbit antimouse Fc ? was used to evaluate the potential of the patterned surface as a protein microarray chip by means of surface plasmon microscopy (SPM). Moreover, non-specific adsorption of several proteins onto TOAB barriers was also studied using surface plasmon resonance (SPR), and it is evident that undesired adsorption can be eliminated by removing barriers after ligand immobilization, but prior to analyte exposure, by treating the patterned surface with a simple salt regeneration solution. © Springer-Verlag/Wien 2004.

Keywords
Carboxymethylated dextran, Microcontact printing, Protein microarrays, Reversible hydrophobic barrier, Surface plasmon microscopy
National Category
Engineering and Technology
Identifiers
urn:nbn:se:liu:diva-45734 (URN)10.1007/s00604-003-0174-2 (DOI)
Available from: 2009-10-11 Created: 2009-10-11 Last updated: 2022-07-14
2. Protein Microarrays on Carboxymethylated Dextran Hydrogels: Immobilization, Characterization and Application
Open this publication in new window or tab >>Protein Microarrays on Carboxymethylated Dextran Hydrogels: Immobilization, Characterization and Application
2004 (English)In: Microchimica Acta, ISSN 0026-3672, E-ISSN 1436-5073, Vol. 147, no 1-2, p. 21-30Article in journal (Refereed) Published
Abstract [en]

Tetraoctadecylammonium bromide (TOAB, (CH3(CH2)17)4N+Br) has been used to print temporary hydrophobic barriers on carboxymethylated dextran (CMD) hydrogels to create a generic platform for protein microarray applications. The primary reason for printing temporary hydrophobic barriers is to prevent cross-contamination and overflow during microdrop dispensing. Equally important is to eliminate the risk for non-specific binding to the barriers during analyte exposure. This has been accomplished by introducing a regeneration step that removes the barriers after ligand immobilization. The overall fabrication process was characterized by microscopic wetting, atomic force microscopy, imaging ellipsometry, fluorescence microscopy, surface plasmon microscopy and biospecific interaction analysis. A series of model proteins including transferrin, Protein A, anti-myoglobin and bovine serum albumin was spotted into the TOAB-defined areas under different experimental conditions, e.g. at increased humidity and reduced substrate temperature or with glycerol as an additive in the protein solution. Much emphasis was devoted to studies aiming at exploring the homogeneity and activity of the immobilized proteins. The printed barriers were removed after protein immobilization using tert-n-butyl alcohol (TBA). TBA was found to be a very efficient agent as compared to previously used salt regeneration solutions, and the regeneration time could be reduced from 30 to 10 minutes. Finally, the potential of using the well established CMD hydrogel chemistry as a platform for protein microarrays was exploited using surface plasmon microscopy.

Keywords
Reversible hydrophobic barrier, microcontact printing, piezodispensing, protein microarrays, surface plasmon microscopy
National Category
Other Basic Medicine
Identifiers
urn:nbn:se:liu:diva-14919 (URN)10.1007/s00604-004-0223-5 (DOI)
Available from: 2008-09-30 Created: 2008-09-30 Last updated: 2021-09-23
3. Structural characterization of microcontact printed arrays of hexa(ethylene glycol)-Terminated alkanethiols on gold
Open this publication in new window or tab >>Structural characterization of microcontact printed arrays of hexa(ethylene glycol)-Terminated alkanethiols on gold
2004 (English)In: Langmuir, ISSN 0743-7463, E-ISSN 1520-5827, Vol. 20, no 15, p. 6206-6215Article in journal (Refereed) Published
Abstract [en]

This paper reports on the structural characteristics of microcontact printed oligo(ethylene glycol)-terminated alkanethiol layers, HS(CH 2)15CONH-(CH2CH2O)6-H (hereafter EG6), on gold. Microwetting, contact angle goniometry, imaging null ellipsometry, and infrared reflection-absorption spectroscopy (IRAS) are used to characterize the printed EG6 layers, and the quality of these layers in terms of layer thickness and the crystallinity of the alkyl and ethylene glycol portions is compared with data obtained from analogous layers prepared by solution self-assembly. The outcome of the printing process is critically dependent on the experimental parameters used to prepare the patterns. It is found that high quality layers, consisting of densely packed all-trans alkyl chains terminated with relatively helical hexa( ethylene glycol) tails, are formed by inking the poly(dimethylsiloxane) (PDMS) stamp with a 1 mM EG6 solution and contacting it with gold for 15 min. The homogeneity of printed layers is not as good as the homogeneity of those prepared from solution under similar conditions, most likely because of simultaneous transfer of low molecular weight residues from the PDMS stamp. These residues, however, can be easily removed upon ultrasonication in ethanol without affecting the quality of the printed layer. Further on, the microscopic square-shaped bare gold patterns formed after microcontact printing (µCP) are subsequently filled with 16-hexadecanoic acid (hereafter THA) or HS(CH 2)15CONH-(CH2CH2O)6-COOH (hereafter EG6COOH) to provide a microarray platform for further covalent attachment of biomolecules. Well-defined structures in terms of wettability contrast, sharpness, and height differences between the printed and back-filled areas are confirmed by imaging null ellipsometry and microscopic wetting.

National Category
Engineering and Technology
Identifiers
urn:nbn:se:liu:diva-45686 (URN)10.1021/la049421a (DOI)
Available from: 2009-10-11 Created: 2009-10-11 Last updated: 2021-09-23

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