The use of an airtight frame in low-energy buildings could increase the risk of health-related problems, such as allergies and sick building syndromes (SBS), associated with chemical emissions from building materials, especially if the ventilation system is not functioning properly. In this study, the indoor air quality (IAQ) was investigated in newly built low-energy and conventional preschools by monitoring the indoor air temperature, relative humidity, particle-size distribution and levels of carbon dioxide (CO2), nitrogen dioxide (NO2), formaldehyde and total volatile organic compounds (TVOC). The thermal comfort was satisfactory in all preschools, with average indoor air temperature and a relative humidity at 21.4C and 36%, respectively. The highest levels of TVOC (range: 130–1650 mg/m3 toluene equivalents) and formaldehyde (range: 1.9–28.8 mg/m3) occurred during the first sampling period associated with strong emissions from building materials. However, those preschools constructed with environmental friendly building materials (such as Swan Eco-label) had lower initial TVOC levels compared to those preschools constructed with conventional building materials. The IAQ and indoor chemical emissions were also strongly dependent on the functioning of the ventilation system. Preliminary risk assessment indicated that exposure to acrolein and crotonaldehyde might lead to respiratory-tract irritation among occupants.