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Compressed SVD-based L plus S model to reconstruct undersampled dynamic MRI data using parallel architecture
COMSATS Univ Islamabad, Pakistan; Univ Poonch Rawalakot, Pakistan.
Linköping University, Department of Health, Medicine and Caring Sciences, Division of Diagnostics and Specialist Medicine. Linköping University, Faculty of Medicine and Health Sciences. Linköping University, Center for Medical Image Science and Visualization (CMIV).ORCID iD: 0000-0003-3869-3482
COMSATS Univ Islamabad, Pakistan.
2024 (English)In: Magnetic Resonance Materials in Physics, Biology and Medicine, ISSN 0968-5243, E-ISSN 1352-8661, Vol. 37, p. 825-844Article in journal (Refereed) Published
Abstract [en]

Background Magnetic Resonance Imaging (MRI) is a highly demanded medical imaging system due to high resolution, large volumetric coverage, and ability to capture the dynamic and functional information of body organs e.g. cardiac MRI is employed to assess cardiac structure and evaluate blood flow dynamics through the cardiac valves. Long scan time is the main drawback of MRI, which makes it difficult for the patients to remain still during the scanning process.Objective By collecting fewer measurements, MRI scan time can be shortened, but this undersampling causes aliasing artifacts in the reconstructed images. Advanced image reconstruction algorithms have been used in literature to overcome these undersampling artifacts. These algorithms are computationally expensive and require a long time for reconstruction which makes them infeasible for real-time clinical applications e.g. cardiac MRI. However, exploiting the inherent parallelism in these algorithms can help to reduce their computation time.Methods Low-rank plus sparse (L+S) matrix decomposition model is a technique used in literature to reconstruct the highly undersampled dynamic MRI (dMRI) data at the expense of long reconstruction time. In this paper, Compressed Singular Value Decomposition (cSVD) model is used in L+S decomposition model (instead of conventional SVD) to reduce the reconstruction time. The results provide improved quality of the reconstructed images. Furthermore, it has been observed that cSVD and other parts of the L+S model possess highly parallel operations; therefore, a customized GPU based parallel architecture of the modified L+S model has been presented to further reduce the reconstruction time.Results Four cardiac MRI datasets (three different cardiac perfusion acquired from different patients and one cardiac cine data), each with different acceleration factors of 2, 6 and 8 are used for experiments in this paper. Experimental results demonstrate that using the proposed parallel architecture for the reconstruction of cardiac perfusion data provides a speed-up factor up to 19.15 x (with memory latency) and 70.55 x (without memory latency) in comparison to the conventional CPU reconstruction with no compromise on image quality.Conclusion The proposed method is well-suited for real-time clinical applications, offering a substantial reduction in reconstruction time.

Place, publisher, year, edition, pages
SPRINGER , 2024. Vol. 37, p. 825-844
Keywords [en]
cMRI; CPU; OpenMP; GPU computing; CUDA; pMRI; CS; FFT; Artifacts
National Category
Radiology, Nuclear Medicine and Medical Imaging
Identifiers
URN: urn:nbn:se:liu:diva-199708DOI: 10.1007/s10334-023-01128-5ISI: 001107736100001PubMedID: 37978992OAI: oai:DiVA.org:liu-199708DiVA, id: diva2:1821356
Available from: 2023-12-20 Created: 2023-12-20 Last updated: 2024-11-06

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Qazi, Sohaib
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Division of Diagnostics and Specialist MedicineFaculty of Medicine and Health SciencesCenter for Medical Image Science and Visualization (CMIV)
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