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Towards embedding stain-invariance in convolutional neural networks for H&E-stained histopathology
Radboud Univ Nijmegen, Netherlands.
Linköping University, Department of Health, Medicine and Caring Sciences, Division of Diagnostics and Specialist Medicine. Linköping University, Faculty of Medicine and Health Sciences. Region Östergötland, Center for Diagnostics, Clinical pathology. Radboud Univ Nijmegen, Netherlands.ORCID iD: 0000-0001-7982-0754
Radboud Univ Nijmegen, Netherlands.
2024 (English)In: DIGITAL AND COMPUTATIONAL PATHOLOGY, MEDICAL IMAGING 2024, SPIE-INT SOC OPTICAL ENGINEERING , 2024, Vol. 12933, article id 1293304Conference paper, Published paper (Refereed)
Abstract [en]

Convolutional neural networks (CNNs) are known to fail if a difference exists in the data they are trained and tested on, known as domain shifts. This sensitivity is particularly problematic in computational pathology, where various factors, such as different staining protocols and stain providers, introduce domain shifts. Many solutions have been proposed in the literature to address this issue, with data augmentation being one of the most popular approaches. While data augmentation can significantly enhance the performance of a CNN in the presence of domain shifts, it does not guarantee robustness. Therefore, it would be advantageous to integrate generalization to specific sources of domain shift directly into the network's capabilities when known to be present in the real world. In this study, we draw inspiration from roto-translation equivariant CNNs and propose a customized layer to enhance domain generalization and the CNN's ability to handle variations in staining. To evaluate our approach, we conduct experiments on two publicly available, multi-institutional datasets: CAMELYON17 and MIDOG.

Place, publisher, year, edition, pages
SPIE-INT SOC OPTICAL ENGINEERING , 2024. Vol. 12933, article id 1293304
Series
Progress in Biomedical Optics and Imaging, ISSN 1605-7422
Keywords [en]
domain generalization; computational pathology; deep learning
National Category
Other Physics Topics
Identifiers
URN: urn:nbn:se:liu:diva-204377DOI: 10.1117/12.3006572ISI: 001219295700002ISBN: 9781510671713 (print)ISBN: 9781510671706 (print)OAI: oai:DiVA.org:liu-204377DiVA, id: diva2:1868943
Conference
Conference on Medical Imaging - Digital and Computational Pathology, San Diego, CA, feb 19-21, 2024
Available from: 2024-06-12 Created: 2024-06-12 Last updated: 2024-06-12

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van der Laak, Jeroen
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Total: 61 hits
CiteExportLink to record
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Citation style
  • apa
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